-
Hello!
After installing the new version of the MinKnow (Installed version: 24.02.10, MinKNOW core: 5.9.7, Dorado: 7.3.9), readfish seems to be unable to communicate with the caller. Below I attach …
-
Hej,
Thanks for this really pretty tool! I encountered a small issue when using it with dorado's output:
a) When demultiplexing with dorado demux, toulligQC (v2.6) does not produce the barcode p…
-
Hello ReadFish folks,
We've run into an issue while trying to run a ReadFish experiment on a flongle. When attempting to split the flow cell into two regions we get the following error:
```
| Tr…
-
Hi all, as above.
I ran dorado basecaller via windows PowerShell, and tried to run dorado demux, but get the error above...
.\dorado.exe basecaller hac ...\all\pod5 --kit-name SQK-RBK110-96 > …
-
Hi,
I recently rebasecalled some old R9.4.1 ONT data (using dorado sup) and I'm hoping to assemble it using canu. What parameters would you suggest tweaking for this?
I was thinking of reducing t…
-
# Issue Report
## the issue:
The program runs very slow. For each pod5 file with 400,000 reads, it takes more than 1 day. For each sample, I have more than 16 pod5 files, therefore it could take …
-
I am new to this method of genome assembly, so I am struggling a little with installing Canu.
I think I should use the following command (but I am not sure):
`curl -L https://github.com/marbl/can…
-
Hi,
Firstly, many thanks for this incredibly useful tool.
I am running ClairS-TO with the singularity container on a ONT WGS run. The library was basecalled and aligned using dorado 0.6.2.
C…
-
Hi team,
Since Pychopper uses primers (SSP, VNP) for classifying the reads, the primers should be kept during dorado basecalling.
While dorado `--trim` option takes as its argument one of the fo…
-
Building crashes, make output attached.
Linux, in-house developed, no build issues before until current release.
Can you help?
[log.v0.6.0-Release.log](https://github.com/nanoporetech/dorado/fil…