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Hi.
In the Michigan Imputation Server pipeline page (http://imputationserver.readthedocs.io/en/latest/pipeline/), the Minimac4 command is using --meta and --minRatio in Minimac4?
However, I ca…
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I download all ftp files from article"Test Illumina+Pacbio data set for MaSuRCA" in"MaSuRCA genome assembly package" website. After run the assemble.sh I got these error
[rom1025tyc@clogin4 yeast]$…
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I tried adVNTR on PacBio data and the output bed file has only None values in R1 and R2 columns. It basically does not genotype any tandem repeat region.
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Hi Chris,
I am attempting to implement iRep for a single metagenomic reconstruction and a very large sam file (36 G). The default thread behaviour is listed a 6 threads, but top reveals I am only usi…
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Hi,
In the paper “Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis” , we failed to find the polish step of the haplotype-resolved …
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hi Dengfeng:
something was wrong when i used purge_dup step 2, my paf file produced in step1 is about 1.3G, bellow is my command lines:
########################
/hwfssz1/ST_AGRIC/USER/chenhongyun/a…
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Twitter question from Jo Williams-Newkirk: can we have a function to pick lambda eg. for equal weight on branch length & topology?
Thanks for the question, Jo. If I understand correctly, you're sayin…
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Hi I have two questions one about --pcadapt and one about --selection.
1. pcadapt- In the paper you describe adjusting the output by the genome inflation factor, how can I do that with my output? I w…
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Edit: despite the title this link list now contains all kinds of reference material for benchmarking/normal-filtering SV (including CNV) calls on a population level as well on single sample (mostly ce…
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I have PacBio Hifi data for a diploid plant species (1.1% heterozygosity). I assembled the genome using HiCanu and aligned raw reads back to the genome using:
`minimap2 -t 20 -I 16G -x map-pb HiCan…
cwb14 updated
2 years ago