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```
schrammca@cogsworth$> ~/Downloads/vsearch-2.13.6-linux-x86_64/bin/vsearch -cluster_fast work/preprocess/GTGTTAGGTATATGGA/CGATCCCTCT.fa --consout cons.fa -id .97 -msaout msa.fa
vsearch v2.13.6_li…
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Hi,
I am trying canu again (default parameters) on a Linux pbs server and I keep getting this illegal division by zero error. I tried changing the minReadLength, minOverlapLength and correctedError…
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If I run `mmseqs taxonomy` with version 9.d36de on a taxonomy database created with version 8.fac81, then I get the following error:
```
[...]
Filter by numerical comparison to first row.
[=====…
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Hello,
We are having issues on running Canu on our cluster, the error says:
canu failed with 'can't configure for SGE'.
The command is: /opt/canu/Linux-amd64/bin/canu -d /home/../250k_assembly -p tes…
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Is this a known issue or is it just my own system?
----------------------------------------------------------------------------------------------------
Command line: /usr/local/bin/spades.py --meta …
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Hello,
I am trying to perform an assembly with some pacbio and some nanopore reads and my job stop quite early on without much explanation.
The command I used is:
```
canu \
-p doublon-mix …
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@pranathivemuri Let me know if this is the right place to file this, or whether this should be in https://github.com/czbiohub/bam2fasta/issues/
Using `bam2fasta` in this pipeline, the docker image…
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Hello, thank you for reading the below info!
I'm new in genome assembly (nanopore) and it's the first time using Canu for reads error correction.
**version**: Canu snapshot v1.8 +276 changes (r9486 …
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I'm running metaspades on my dataset and it's getting stuck at a particular stage. This happened yesterday as it was running overnight. I tried again today and it's been running for a few hours with…
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This is more or less the same issue as [this one](https://github.com/marbl/canu/issues/1220).
I get a bogus overlap error stating `Assertion 'ovlLength < AS_MAX_READLEN' failed.` Based on my interp…