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Hi!
I am trying to use this package to remove as much contaminants as I can from an already cross contaminated samples.
For context, this data comes from NovaSeq sequencing, so I am working with E…
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Dear mirlyn developers,
First of all I would like to congratulate you for the mirlyn R package and the concept of rarefaction multi-iterative.
I know that the R package is in the initial phase, …
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Dear developer,
I have a question about how to display the Taxonomy information in the tip labels of the taxa tree.
In my case, I convert the phyloseq object into MPSE format and try to identif…
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Can we add a CSS method to the transformAssay() function?
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White-nose syndrome restructures bat skin microbiomes – Meghan Ange-Stark – Microbiology Spectrum
https://journals.asm.org/doi/10.1128/spectrum.02715-23
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https://arxiv.org/pdf/1611.00953.pdf L1 on weights + L2 squared fusion between all groups https://cloud.r-project.org/web/packages/fuser/vignettes/subgroup_fusion.html
https://rdrr.io/cran/genlass…
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**Background**:
- Cancer Classification: Cancer manifests in various forms across different tissues and organs of the body. The classification of cancer plays a pivotal role in understanding its beh…
inodb updated
5 months ago
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Some microbiome studies are starting to report measures of absolute abundance in addition to sequencing read counts and relative abundances. The `MicrobiomeExperiment` could/should support incorporati…
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Is there a reason why SEtools::mergeSEs is used instead of mia::mergeSEs https://github.com/microbiome/miaTime/blob/bd56c403cbe1673ae0fb5053f4ddd35b3d0ccf03/R/getStepwiseDivergence.R#L48
I think th…
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Hi,
First of all, I would like to congratulate you on a great ontology tool, many thanks!
I am experiencing a few matching issues while uploading our dataset (serum samples from healthy humans in th…