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### Ask away!
I am unable to progress any further after an error at getGenome() step, similar to one of the previous questions about using the pipeline for non-model genomes. However, in my case, i…
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Good day,
Hello I am trying to use the Monoallelic expression, however, I am receiving the this error:
**_too few IDs in DROP_GROUP mae, please ensure that it has at least 1 IDs, groups: []_**
…
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Hello,
Rather than an issue with code, I would need an advice on data generation.
I would like to generate a sample of some species using only my own genomes.
I only need to generate reads and …
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Genbank and refseq accessions are formatted such as [GCA_900620225.1](https://www.ncbi.nlm.nih.gov/assembly/GCF_900620225.1/). The assemblies are named such as `GCA_900620225.1_BPH2819_genomic.fna` . …
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Hey there,
Just wanted to try out your phylogenomics pipeline, however I didn't get very far:
I ran the following:
./phylociraptor setup -t local --config-file ~/data/Analyses/2024/202505_X_S…
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Thank you for WashU's very powerful capabilities. The crab-eating macaque (Macaca fascicularis) is currently the most commonly used monkey in medical research, and we have seen recent reports on Hi-C …
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If I use a NCBI fasta file that has identifiers like "NC_000003.11" rather than "3" for contigs, then it occasionally renames variants to use the contig from the fasta
```
# NCBI fasta file obtain…
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Hi @lskatz , Is there a way to add certain genera or species assembly in the mash tree to compare the in-house isolated species genome? Currently, I am downloading the assembly of interested genera an…
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The frame-rate of certain Gosling visualizations is very low when zooming and panning. What are the main bottlenecks?
# Flame charts
We can interact with laggy visualzations and observe their f…
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Hello,
I am confused with what is wrong with the commands.
I use the fastq.gz file download from NCBI SRA.
Here is my command:
#!/bin/bash
#SBATCH --partition=node2q # Queue
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