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lskatz
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mashtree
:deciduous_tree: Create a tree using Mash distances
GNU General Public License v3.0
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mashtree_bootstrap.pl reading fasta files as commands
#89
noaheb98
opened
4 days ago
4
EXCEPTION: Bio::Root::Exception
#88
caizhangbin
opened
2 weeks ago
3
use bindash 2.0 instead of mash (100 times faster)
#87
jianshu93
closed
1 month ago
2
Mashtree::createTreeFromPhylip: Can't call method "as_text" on an undefined value - using .msh as input
#86
Lumimar
opened
6 months ago
1
Ways to add NCBI assembly in mash tree
#85
kusandeep
closed
7 months ago
2
Mashtree v1.4.6 is available at conda but its still showing v0.37
#84
MHassanSaeed
opened
9 months ago
4
removed ROSS
#83
lskatz
closed
10 months ago
0
Request for new release with ROSS bug fix?
#82
verdurin
closed
10 months ago
7
Bootstrapping requires a lot of resources?
#81
goeckeritz
opened
11 months ago
1
Illumina Short Reads
#80
rmormando
closed
10 months ago
1
No sqlite
#79
lskatz
closed
1 year ago
0
mashtree_jackknife.pl: main::main: ERROR: one or more threads did not return an array of jack knife tree files as expected
#78
Rohit-Satyam
opened
1 year ago
2
Unit testing
#77
lskatz
closed
1 year ago
0
Quoting of file paths
#76
mbhall88
opened
1 year ago
3
mashtree: Mashtree::createTreeFromPhylip: Can't call method "as_text" on an undefined value
#75
angeladelvalle
opened
1 year ago
1
Can't continue after import errors at /home/ubuntu/bin/mashtree_bootstrap.pl line 26.
#74
MHassanSaeed
opened
1 year ago
2
Missing mash distance for some pairs of fasta assembly
#73
tifwan
opened
1 year ago
1
Mashtree not running
#72
parolinaline
closed
1 year ago
4
Unexpected mashtree parameters for bootstrap replicates
#71
lcoombe
opened
1 year ago
1
Mastree installation problem
#70
sazahran
opened
1 year ago
1
Mashtree being stuck
#69
madhubioinfo
opened
1 year ago
2
mashtree: main::mashDist: ERROR
#68
noorshu
closed
2 years ago
0
mashtree: Argument list too long
#67
noorshu
closed
2 years ago
2
Bootstrap/jacknife perl script does not work on large datasets
#66
mdiricks
opened
3 years ago
4
Paired-end reads
#65
mdiricks
closed
2 years ago
4
mashtree: Mashtree::createTreeFromPhylip: Can't call method "as_text" on an undefined value
#64
mdiricks
closed
2 years ago
3
Unknown option: kmerlength
#63
Rob-murphys
closed
2 years ago
3
How to interpret min-hash values in phylogeny
#62
Rob-murphys
closed
3 years ago
3
*fa.fasta gives 'I could not understand what type of file this is'
#61
samlipworth
closed
2 years ago
1
Postgres Migration Error(ORA2PG) FATAL: 12557 ... ORA-12557: TNS:protocol adapter not loadable (DBD ERROR: OCIServerAttach)
#60
jitenpansara
closed
3 years ago
2
mashtree_bootstrap.pl --tempdir undocumented.
#59
hmontenegro
closed
3 years ago
1
Running mashtree with large number of genomes
#58
seansolari
closed
3 years ago
2
Conda Install not working
#57
JChristopherEllis
closed
3 years ago
1
Select outgroup
#56
annabananakobana
closed
3 years ago
3
The phylip conversion step too slow
#55
karel-brinda
closed
2 years ago
9
Mashtree::createTreeFromPhylip: Can't call method "as_text" on an undefined value
#54
karel-brinda
closed
3 years ago
2
Help understanding boostrap results
#53
brettChapman
closed
4 years ago
3
Allow use of premade sketches in conjunction with --file-of-files
#52
bede
closed
3 years ago
2
--numcpus doesn't seem to work with mashtree_jackknife.pl
#51
mcroxen
closed
4 years ago
7
Continue canceled job without calculating the distances again
#50
mihkelvaher
closed
2 years ago
4
Consistency fixes
#49
csoneson
closed
4 years ago
1
Error: I could not understand what kind of file this is
#48
samlipworth
closed
3 years ago
2
Installing mashtree on CentOS (Docker image)
#47
mihkelvaher
closed
4 years ago
3
INSTALL.md Quicktree unzipping cmd error
#46
mihkelvaher
closed
4 years ago
1
mash sketch ERROR: Unrecognized option: -S
#45
JPegorino
closed
3 years ago
5
Need to check for version 2 of Mash
#44
lskatz
closed
4 years ago
1
Running mashtree locally with local dependecies
#43
mihkelvaher
closed
4 years ago
5
mashtree_jackknife.pl exited
#42
Caro-Ca
closed
4 years ago
21
Consider DBD::CSV
#41
tseemann
closed
1 year ago
8
Weird -h behavioiur
#40
tseemann
closed
4 years ago
5
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