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Hi @dportik ,
I have an issue concerning the `MAGContigNames` rule. It is the same one that the issue #84 , but the author solved it without any explanation.. And so, the `8-summary` is empty. I …
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Migrated from https://redmine.open-bio.org/issues/2819 which I filed on 2009-04-22,
> On their FTP site the NCBI provide a range of files for each genome/plasmid/chromosome, e.g.
ftp://ftp.ncbi.ni…
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Suggested yeast dataset of interest to me: Ribosome profiling data [GEO: GSE131176](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE131176).
From *Condensation of Ded1p Promotes a Translation…
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Hello! What a wonderful program you have here.
I was writing to ask if lightmotif is capable of searching for motifs in protein sequences. It looks like functionality is partially in place but I c…
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Hi, I'm using FreeHiC for simulating Cow Hi-C data.
For fastqFile data using during training steps, SRR6691720 data (https://www.ncbi.nlm.nih.gov/sra/?term=SRR6691720) was used and other parameters…
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### **Description** Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1594
**Sub-lineage of:** KP.2.3 (= JN.1 + S:∆S31, S:H146Q, S:R346T, F456L, V1104L + ORF3a:K67N + O…
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I am working on a CRISPR data treated by two sgRNAs and sequenced with targeted sequencing. The distance between the two sgRNA is 3000bp which is much longer than amplicon. The targeted area is the w…
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Throughout the codebase the word 'genomes' was often used to refer to different nucleotide sequences. This should be called segments
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Hi Simon,
I used popgenWindows.py to analysize the pi and fst of two populations with the commnad：
python2 /public/home/kefushi/software/genomics_general/popgenWindows.py -w 100000 -s 5000 -m 100 -…
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The description NC_000017.11(NM_000154.1):c.[700del];[(?_945-7)_(*64del_?)] describes allelic variants in the _GALK1_ gene leading galactokinase 1 deficiency. The first variant is a straightforward si…