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We have an example of one dataset converted in this PR:
https://github.com/bigbio/proteomics-metadata-standard/pull/541
Let us know what you think.
If ok, we can import 204 more datasets fro…
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Issues identified during working session GSC22 meeting in Moorea:
**Controlled vocabulary terms**
- `Contextual Metadata Analytical Procedures` confusing/overly specific
- `Quantitative Amplific…
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A user asked me how to convert some BAF files from a PRIDE dataset (PXD010092), and after investigating I had to tell them it's not possible because the dataset only included BAF files instead of the …
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**Describe the bug**
2022-05-13 01:52:50 [INFO] - ...20%...40%...Process 'IonQuant' finished, exit code: 1
Process returned non-zero exit code, stopping
Exception in thread "main" java.lang.OutOfMe…
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I uploaded the proteomics data from your repository (ggVolcanoR/inst/extdata/Proteomics data.csv) as a test using "own" data, after a file we generated here (correct 3 column headings, in .csv format…
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Hello,
As an action of the Oct 2017 GOC meeting, ECO has create evidence codes for HTP experiments.
We ( @hatrill and the HTP working group) will provide annotation guidelines; once these are …
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hello, i have a question, i want to know why your cptac proteome data's value of a gene differential from the tmt10.tsv from CPTAC offical website
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Hello,
when running FragPipe in headless mode (analyzing a TMT experiment), I get weird TMT channel names. I put an example here: https://oc.embl.de/index.php/s/9iEiAtMw6j0hSMK
In the annotatio…
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Great package! For someone that is new to working in R I very much appreciate the ease, documentation and tutorials.
I have some suggestions on what I would find useful additions to improve interpre…
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Hi all, neat work on this package so far and congrats on the publication in Metabolites! I have a dumb question about the package - is it possible to plot an EIC for a given mass range? It seems like …