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As Jn.1.7.8 there are many lineages carrying a large deletion around 185-189, most of them died off or currently dying, but this LB.1.7 went on circulating , maybe just luck to be in NY but better to …
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
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Transferred back to https://github.com/sars-cov-2-variants/lineage-proposals/issues/1671
In the batch uploaded today from Philippines i noticed a weird a double AA mutation in the spike in a row.
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On [this line](https://github.com/SamuelBrand1/KenyaCoV/blob/master/src/dynamics.jl#L167) of **src/dynamics.jl**, Julia reports a BoundsError on SparseMatrix. Seems like the function is trying to acce…
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I have successfully run test data and Wuhan data on which is paired-end data, but not able to run single-end data as there is no specific guide/manual for it.
I have got to know that it supports sing…
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**Background**
To address the "scoring fairness" modeling challenge identified in the variant-nowcast-hub's README, this hub's evaluation logic will exclude state/date combinations with reported se…
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The [preprint](https://www.medrxiv.org/content/10.1101/2024.04.22.24305845v1) contains fecal shedding data for human mtDNA, PMMoV, and SARS-CoV-2 in fecal samples for 42 inpatients.
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Hi @BasilPH
I think we have taken a good step forward, but also a small step backwards! I tested out the latest version you wanted me to test (0.2.0rc1) and I got the following stack trace error:
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Title: Hydroxychloroquine in patients with COVID-19: an open-label, randomized, controlled trial
## Please paste a link to the paper or a citation here:
Link: https://doi.org/10.1101/2020.04…
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Loving the new Shiny app for configuration! I caught a couple of issues while I was playing around with it - I'll update this if I find more:
### config.yaml
- excludes `Submission_Position:` if…