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```
wget ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/395/GCF_003254395.2_Amel_HAv3.1/GCF_003254395.2_Amel_HAv3.1_genomic.fna.gz
wget ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/395/G…
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Can we also support IDs under annotation-controller?
- [x] `/annotation/dbsnp/[dbsnp_id]`
- [ ] `/annotation/cosmic/[cosmic_id]`
- [ ] `/annotation/hgmd/[hgmd_id]`
We can utilize the following…
jjgao updated
6 years ago
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The genome-nexus-vep supports retrieving VEP annotations by a list of variants in **ENSEMBL region** format only.
There is no endpoint to do it by a list of variants in **hgvs** format at the moment.…
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In general, hoping folks will review and provide feedback on the Annotation Content Model (ACM) outlined [here](https://docs.google.com/document/d/1csUrC4kX6G1V1GIz07btQQ3oL_cdDPJShuauL_uCjEw/edit#hea…
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VCFWriters always require a pre-existing VCFReader object or an input VCF file. In our use case the VCFWriter annotates an existing VCF file hence, we need to pass the correct header of the VCF file p…
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Hi, I am trying to run partition heritability with my previously calculated LD scores for a new annotation and I am getting this error message:
Call:
./ldsc.py \
--h2 file.sumstats \
--ref-ld-c…
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What version of RefSeq database is downloaded/used in the annotation cache when executing: `dotnet Downloader.dll --ga GRCh37 -o Data`? Is there a way to control/leverage a specific transcript databas…
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I've a vcf entry like:
```
chr 8083 . GG GAA,GA 40008.9 . AB=0.137227,0.819141;ABP=1627.35,1260.12;AC=1,1;AF=0.5,0.5;AN=2;AO=195,1164;CIGAR=1M1I1X,1M1X;DP=1421;DPB=1521.5;DPRA=0,0;EPP=4.89224,29.8…
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### Issue: Implementing Iterative DPO on Phi3-4k-instruct
Hi, thanks for the great work and open source!
I am trying to implement iterative DPO on `Phi3-4k-instruct`. The following outlines my…