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Hello, thanks for providing this much needed package for DEG analysis of single cells from multiple subjects.
I am trying to use the mixed modeling approach using _mmDS_() however am receiving an …
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I am working through the tutorial about [RNA-Seq Data Pathway and Gene-set Analysis Workflows](https://bioconductor.org/packages/release/bioc/vignettes/gage/inst/doc/RNA-seqWorkflow.pdf) but the "Quic…
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## Describe the bug
Thank you for your work! I wanted to report that no data object is returned with `fetch_data(type='spe').
### Provide a minimally reproducible example (reprex)
```
if (!r…
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I used following commands on R Version 1.1.442 .
`library(TCGAbiolinksGUI)`
`TCGAbiolinksGUI()`
It opens a web browser with address as below
http://127.0.0.1:5209/
and then crashes. How to find …
ghost updated
6 years ago
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Hi,
Thank you for providing a nice summary of dysbiosis indexes in one package!
I was trying it out on the test data and then mine as well, unfortunately `dysbiosisOBB` gives me an error. I was …
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Hi Aaron,
I used `read10xCounts(..., type = "HDF5")` to load a HDF5 file from CellRanger v3.
I was surprised to get an error when I then ran `scater::calculateQCMetrics()` on the result.
Ultimately…
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I am running the basic codes for Elastic principal graph construction as showed in: https://rdrr.io/github/Albluca/ElPiGraph.R/f/guides/trim.Rmd
TreeEPG sessionInfo()
R version 4.1.2 (2021-11-01)…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/akbariomgba/crupR
Confirm the following by editin…
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Hi all,
I'm using ASpli (mosly copied the example pipeline and replaced with my files) and encountered the following error:
> jdur
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I run the tutorial dataset and I want to only calculate certain cell type interactions. For example:
sender = c(1,2,3,4)
receiver = c(5,6,8)
cellchat