-
Hi there,
I'm annotating a few genomes and I realised that funannotate does not have any integrated tool for annotating ncRNA other then tRNAscan-SE. I will be annotating ncRNA through [Infernal](h…
-
```
What steps will reproduce the problem?
1. I run blastp separately for every strains as following:
ncbi-blast-2.2.29+/bin/blastp -evalue 1e-05 -outfmt 6 -query 0001.fasta -db
genesOfAllStrainsDB…
-
I'd like to be able to design CRISPR guide RNAs with Poly. Below is a draft spec for a new CRISPR package:
## Spec
Our guide RNA design package should be lightweight and easily extendable and at…
-
I found issue #521 but none of the tips there helped in my case.
I am trying to run bactopia on WSL + Ubuntu, fresh install. Installed MambaForge as per the installation instructions, then installed …
-
Hi Guys -
In bin/bg7 -
# MJSC - Typo here. /jars/ not jar
# MJSC - Typo - Should be BG7.jar
# ugly hack, executions.xml should be a param
cp $BG7_HOME/jars/BG7.jar $output_folder/
# run bg7!
# I wil…
-
Hi, I have two 11Gb paired end fastq file and am trying to run virmap with it, but it has been taking more than 36 hours for the job to run and it still hasn't finished (with 48 cores). I would like t…
-
We have represented known frameshifts in the genome sequence as 1-2 bp overlaps in CDS features (we were once advised by Ensembl that this was the correct way to annotate these). This is necessary …
-
Missing Dependencies, spelling errors, etc
-
Hi all,
As [discussed on the mailinglist some time ago](http://dev.list.galaxyproject.org/odose-td4670198.html) we kindly request your help to make the ODoSE pipeline available to more users easily…
-
Hi @dportik ,
I have an issue concerning the `MAGContigNames` rule. It is the same one that the issue #84 , but the author solved it without any explanation.. And so, the `8-summary` is empty. I …