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Hi,
I am trying to use this library as a replacement to `rust-htslib`. I am getting compilation error while trying to run examples. This can be reproduced both on macOS and centOS.
```rust
> git …
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Hello, I'm running `tigmint-make tigmint draft=myassembly reads=myreads` command in ORCA docker environment. I got this error;
```[E::bgzf_flush] File write failed (wrong size)
[E::bgzf_close] Fil…
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fragments.tsv.gz.tbi and fragments.tsv.gz files were automatically generated by 10x CellRanger
I was following the pipline: https://satijalab.org/signac/articles/pbmc_vignette.html, with the issue:…
sqsun updated
3 years ago
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Upon loading fastq files using adamcontext, I get the following error
```
Exception in thread "main" java.lang.IllegalArgumentException: Fastq 1 (s3a://bgi-concordance-studies/run190704NovaSeq_R1_…
ghost updated
3 years ago
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Hi- I just updated to latest igv.js and I'm getting this error (see screenshot below).
This tabix index is not a directly served file by the web server, it's processing the request range headers se…
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This is a weird edge case, but it appears that FASTA files with CRs break the parser.
The file that I'm trying to parse is [here](https://github.com/Benjamin-Lee/MetagenomicDC/blob/master/data/1000…
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Hi,
I am running Medaka to resolve small indels from an assembly (>4 Gb, scaffolds, not obtained with Racon) and I get an error related to the input reads.
The command is
`medaka_consensus -i Rabio…
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I've noticed that using pysam.FastxFile to iterate over a bgzip'd fastq file only returns a subset of fastq records. The expected result is that all records are iterated over.
Example:
example.…
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Hi,
I'am trying do convert bcl files ion fastq of 10x genomics data using the option UseBasesMask.
Here is the option in the command that I use :
```bash
--use-bases-mask=y28*,i8*,y76*
`…
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Hi,
When trying to compile I get the following error:
```
pregraph_sparse_63mer.v1.0.3 cleaning done.
pregraph_sparse_63mer.v1.0.3 objects generated.
…