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This is a proposal to consider splitting 'Haplotype' into two subtypes - **one to represent the unlocated** haplotype (which is a discontinuous set of alleles), and **the other to represent the locate…
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http://arctos.database.museum/info/ctDocumentation.cfm?table=CTNATURE_OF_ID is a mess.
Ideally I think we should say something about the evidence used for the ID, but that doesn't seem possible. Mi…
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I think we should re-consider the folder naming conventions. Currently,
the only way to find a given SRA is to list everything under /out and
grep the accession. Also, there is no metadata (AFAIK) w…
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Depending where they were sequenced, some of our plates have ``Undetermined_*.fastq`` files where the bar-code demultiplexing failed, and these can include recognisable ITS1 sequences with abundances …
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Hello Felix,
I wanted clarification regarding the mapping efficiency report that is produced after Bismark. For the sake of transparency, here is the full report for one of my samples. They are two…
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@spond Could I ask a question about species number choice from the foreground branch in analysis using absrel and busted?
I found it need a very long time to conduct absrel and busted analysis if, f…
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Hello!
I have a question regarding fastq-dump and would appreciate your advice:
We want to download only a small subset of reads (5000 reads) from an SRA Run by using fastq-dump. We can use -N…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/DanrleyRF/rSWeeP
Confirm the following by editing…
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Hi,
First, thank you for the tool, it is a pleasure to use with both ONT and PB data.
I have generated ~29,000 genes with ~130k transcripts in total from multiple datasets using the TAMA pipeli…
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Hi,
thank you for your great package!
I'm working on the following task. I have a dataset of biological sequences (strings containing ~100-150 letters, every letter is considered as a word and ever…