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### Background
COPASI (http://copasi.org/) is a software application for simulation and analysis of biochemical networks and their dynamics. While the primary interaction with COPASI is over a graphi…
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**Describe the bug**
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> I have a brief question about which babette function to use to run the model contained in the attached .xml file? When I use `run_beast2`, I get the following err…
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Hi all,
Thanks for developing such a cool package!
I have tried using TCGA-BRCA data and it works great!
But I have a small problem, what can I do if I want to use all TCGA PanCancer data? Do …
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Hi, developer,
According to the [Wiki page of MetaPhlAn3.0 installation](https://github.com/biobakery/MetaPhlAn/wiki/MetaPhlAn-3.0#installation) , users can download packed db from [google drive li…
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HI,
I was trying to install haploflow. In the last step when I tried to make the executable I go the following error
make[1]: Entering directory '/home/arun/catfish/snmk_py3.6/bioram_snmkfile/Hapl…
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**Whole species groups like Lactobacillus casei group not present in MetaPhlAn 3**
I have tried to use MetaPhlAn with samples that have Bacillus subtilis and Lactobacillus casei but in the profile ta…
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Hi Kamil,
I have run smudgeplot on my plant pathogenic species and the plots for all but 1 isolate turned out as diploid, as expected. The 1 that did not fit the expectation was predicted to be a p…
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Vahid Salari, Dilip Paneru, Erhan Saglamyurek, Milad Ghadimi, Moloud Abdar, Mohammadreza Rezaee, Mehdi Aslani, Shabir Barzanjeh, Ebrahim Karimi
> Face recognition is one of the most ubiquitous exam…
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## Feature Request:
After speaking with @topepo and @RaymondBalise at the Tidy Dev Day, we discussed options to install from CRAN-like repositories (such as Bioconductor) in the "Install from:" drop-…
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### Documentation Link
_No response_
### Problem
Hi,
I am facing an error while running gmx_MMPBSA_ana. I have installed the latest version of gmx_MMPBSA.
The module PyQt5 is installed …