ropensci babette issues

ropensci / babette

babette is an R package to work with BEAST2

https://docs.ropensci.org/babette

GNU General Public License v3.0

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issues

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Remove hard testthat dependency.

#107 olivroy closed 9 months ago
1
Babette with beauti 2.6

#106 thijsjanzen closed 2 months ago
4
babette for Phylogeographic

#105 NailouZhang closed 2 months ago
2
babette sleeps/freezes/becomes unresponsive

#104 AJFeng closed 2 months ago
7
How to deal with 'the ucldMean stateNode was absent in BEAST v2.4'?

#103 richelbilderbeek closed 2 years ago
3
Feature request: amino acid sequence alignments

#102 tslaird opened 2 years ago
1
babette cannot read BEAST file: correct

#101 richelbilderbeek closed 2 years ago
6
Fix 'Package babette_2.3.tar.gz has been built for Windows - with a WARNING'

#100 richelbilderbeek closed 2 years ago
2
Verify RLN + tipdates works

#99 richelbilderbeek closed 2 months ago
3
Add continued run

#98 richelbilderbeek closed 3 years ago
1
FAQ: How to get the names of the temporary files?

#97 richelbilderbeek closed 3 years ago
2
freqParameter distribution request

#96 GaryNapier closed 3 years ago
5
Two sequences with different length found

#95 richelbilderbeek closed 3 years ago
2
Doubling of clockPrior ID

#94 richelbilderbeek closed 3 years ago
7
Doubling of clockRate parameter in XML when using tipdates_filename

#93 GaryNapier closed 3 years ago
7
Coding for population size initial, upper and lower parameters

#92 GaryNapier closed 3 years ago
11
How to prepare a tipdating file?

#91 richelbilderbeek closed 3 years ago
7
Problem with "tipdates_filename"

#90 geofrunz closed 3 years ago
38
Feature request: add Birth-Death Skyline Serial model

#89 richelbilderbeek closed 3 years ago
2
Question about clock rate

#88 richelbilderbeek closed 4 years ago
11
Example: tip dating

#87 ksw9 closed 4 years ago
7
Example to run BEAST2 with multiple threads

#86 richelbilderbeek closed 3 years ago
2
CRAN: clean up

#85 richelbilderbeek closed 4 years ago
1
babette::update_babette() throws an error on windows

#84 Giappo closed 4 years ago
3
Check babette blog post

#83 richelbilderbeek closed 4 years ago
1
Minor fixes on line 66 & 70

#82 kant closed 4 years ago
2
Process feedback CRAN

#81 richelbilderbeek closed 4 years ago
1
Move 'pics' to 'man/figures'

#80 jeroen closed 4 years ago
7
Mention BEASTifier

#79 richelbilderbeek closed 3 years ago
0
Process feedback CRAN

#78 richelbilderbeek closed 4 years ago
2
Vignette build errro

#77 jeroen closed 4 years ago
3
Contact TIPDATINGBEAST authors about tip dating in babette

#76 richelbilderbeek closed 3 years ago
1
bbt_self_test has namespace problems

#75 richelbilderbeek closed 4 years ago
1
Add NS back in

#74 richelbilderbeek closed 4 years ago
1
Mismatch between number of phylogenies and number of estimates

#73 richelbilderbeek closed 4 years ago
3
Update installation documentation

#72 richelbilderbeek closed 4 years ago
1
Add 'update_babette'

#71 richelbilderbeek closed 4 years ago
2
Can babette run on Peregrine?

#70 richelbilderbeek closed 5 years ago
1
babette Issue that fails on Mac, passes on Peregrine

#69 richelbilderbeek closed 5 years ago
12
Run NS package on win

#68 SpelaBo closed 5 years ago
4
Detect if babette is run in a folder that has DropBox backup

#67 richelbilderbeek opened 5 years ago
0
Feature request: intermediate output

#66 thijsjanzen closed 5 years ago
2
file.exists(output_log_filename) is not TRUE, on MacOS

#65 thijsjanzen closed 5 years ago
16
'run_bbt_from_models' must return ns

#64 richelbilderbeek closed 5 years ago
0
Ask KlausVigo to submit new version to CRAN

#63 richelbilderbeek closed 5 years ago
1
Lose dependency on ggtree

#62 richelbilderbeek closed 5 years ago
1
Check if vignettes work

#61 richelbilderbeek closed 5 years ago
1
Check if citation works

#60 richelbilderbeek closed 5 years ago
1
Use 'beast2_options'

#59 richelbilderbeek closed 5 years ago
1
Use 'inference_model'

#58 richelbilderbeek closed 5 years ago
1