-
via https://bdj.pensoft.net/nanopublications
![image](https://github.com/globalbioticinteractions/globalbioticinteractions/assets/1084872/03942fc6-c8cc-458a-8da8-034b2ae189ed)
-
Hi,
I stumbled across an issue regarding `-d` argument of `mob_typer`.
To reproduce this error:
I installed mobsuite v 3.1.6 using
```
mamba create -c conda-forge -c bioconda -p /path/to/co…
-
I'm running umi_tools group (v0.5.3) on a bam file of 1.1TiB containing 3401822722 records. On a 256GiB machine, its memory usage is peaking at around 147GiB (and the rest is being used for file cache…
Poshi updated
6 months ago
-
G:\Utils\sratoolkit.3.0.6-win64\bin>fasterq-dump.exe SRR6377819.sra --fasta -p -e 12 -O G:\DNA\Kazan …
-
hello,I get an error when I run the following command:
nohup TOBIAS ATACorrect --bam LJS.bam --genome Sus_scrofa.Sscrofa11.1.dna.toplevel.fa --peaks LJS-merged_peaks.bed --read_shift 0 0 --prefix LJS…
-
Hi,
I am trying to use BRAKER2 to predict genes based on protein sequence from remote species only. The version I used was 2.1.6.
Command I used was ./braker_2.1.6/BRAKER/scripts/braker.pl --core…
-
I am running dorado/dorado-server on a SLURM cluster, and there is a very high performance partition that I can access but it can kick me off spontaneously if the "owner" of a machine starts up a job,…
-
Hey,
Keen to try RU with our GridION, but your README states we need guppy 3.4 and the current software release for the GridION is only at 3.2. I don't really want to install anything on the GridIO…
-
## Need
Customers have requested GENS to be implemented for Balsamic. GENS is a tool basically for viewing copy-number alterations and regions with LoH.
Originally developed in Lund, it has bee…
-
Hello, I have two questions regarding the BAM preprocessing.
1) I used MarkDuplicatesSpark to mark but didn't remove the duplicates. Will it affect variant calling?
2) Is BQSR required?
Thank you…