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Hello,
I'm trying to define single-copy orthogroups from the `Nx.tsv` files. i'm getting results that I consider confusing, so I wrote a couple of lines to check if a specific `Nx.tsv` has only gene…
matrs updated
3 years ago
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FBgn0260932 cuff has a NOT RNA pyrophosphohydrolase activity (IDA) but is getting a positive annotation from PTN000273640
http://amigo.geneontology.org/amigo/gene_product/FB:FBgn0260932
I thou…
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Hi, I want to investigate the ginger (Zingiber officinale, Zingiberaceae) WGD events, and three rounds of WGD events (α-, β- and γ-WGD) have occurred in the Musa acuminata (Musaceae). I expect the WGD…
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Hi,
May I ask how to deal with the genomes that have been filtered "... user genomes have amino acids in
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## ANTP tests
### Effect of phylogenetic bias in the reference set
- [x] evaluate accuracy for insect and vertebrate ANTP subsets separately — scripts
- [x] running 20 * n iterations of tip p…
xgrau updated
3 years ago
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I have run generax with the following options
generax -s MainSample_CATGTR_editedfixed.newick -f Families_acsc.txt -r UndatedDL -p acsc
The reconciliation appears to have worked, with the progra…
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Hello,
I apologize I cannot diagnose this myself as I am not familiar with R, but I keep getting this error and I believe my script is set up correctly.
> Loci with less than 15 taxa will be dis…
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Should investigate whether there is any reuse of clinical assertion variations.
- If two assertions refer to the same normalized variant (variation), do they also refer to the same uploaded varian…
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Hi @davidemms ,
What are some things one should keep in mind while preparing (and supplying to `OrthoFinder`) a user-defined species tree?
For instance, I am wondering if the branch lengths are …
vragh updated
3 years ago
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I use the "Name" attribute for secondaryIdentifier, which I merge on, so this matters in the mine loads.
Glycine_max/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.gff3
```
glyma.…