issues
search
clingen-data-model
/
clinvar-streams
1
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Generate notification messages for sept 2023 clinvar diffs
#89
theferrit32
closed
8 months ago
0
Generate notification message for dropped 20230910 release
#88
theferrit32
closed
9 months ago
1
Add missing 2023-07-30 release to kafka
#87
theferrit32
closed
11 months ago
1
missing variants + local files refactor + access token timeout
#86
theferrit32
closed
11 months ago
0
Add error log for input / output count mismatches
#85
theferrit32
opened
1 year ago
1
Variants missing from raw stream
#84
theferrit32
closed
1 year ago
1
Initial release
#83
toneillbroad
closed
1 year ago
0
Establish k8s infrastructure for single release jobs
#82
toneillbroad
closed
11 months ago
0
Validate that releases received matches the sequence of releases expected
#81
theferrit32
opened
1 year ago
0
Create a way to do id-based lookup/generation of clinvar-raw records
#80
theferrit32
closed
1 year ago
2
Log a warning if an add is received for a record which exists
#79
theferrit32
opened
1 year ago
0
Load truncated clinvar-raw stream
#78
theferrit32
closed
1 year ago
2
Analysis of VRS normalized clinvar variations that resolve to Text
#77
larrybabb
closed
1 year ago
0
Analysis of ClinVar variations that are not handled by VRS
#76
larrybabb
closed
1 year ago
0
Add connection fail handler and healthcheck
#75
theferrit32
opened
1 year ago
1
Main thread INFO log about session not found
#74
theferrit32
opened
1 year ago
0
Add original and fixed release sequence, and python code for validation and re-generation of notifications
#73
theferrit32
closed
1 year ago
3
Monitor ClinVar FTP site and provide release notifications
#72
tbl3rd
closed
7 months ago
2
Fix dsp clinvar diff notification stream to use manually run snapshots
#71
theferrit32
closed
1 year ago
0
Monitor ClinVar FTP site and provide release notifications
#70
theferrit32
closed
7 months ago
3
Update taoensso dependencies to work around conflicts.
#68
tbl3rd
closed
1 year ago
0
Refactorings to abstract input and output processing
#67
theferrit32
closed
1 year ago
1
Implement local stream offset management instead of using consumer groups.
#66
theferrit32
opened
1 year ago
1
Fixes to duplicate checking
#65
theferrit32
closed
1 year ago
0
Fix deduplication of clinvar-raw stream
#64
theferrit32
closed
1 year ago
8
Revisit lazy processing of files in GCP bucket
#63
theferrit32
closed
1 year ago
1
Bug: clinvar-raw input stream processing restarts when processing a batch of messages takes longer than the consumer group membership timeout
#62
theferrit32
closed
1 year ago
7
Bug: OutOfMemoryError reading file from bucket
#61
theferrit32
closed
1 year ago
0
Major refactor of clinvar_raw to simplify code flow
#60
theferrit32
closed
1 year ago
3
57: Fix false ingest differences.
#59
tbl3rd
closed
1 year ago
1
Extract HGVS expressions and related attributes from the Variation.content field
#58
larrybabb
opened
2 years ago
2
False negative updates are originating in the clinvar_raw event stream
#57
larrybabb
closed
1 year ago
4
Load expanded test dataset with CNVs and additional genes
#56
theferrit32
closed
1 year ago
1
Update/Expand Test Data set
#55
larrybabb
closed
1 year ago
6
Add documentation to clinvar-streams readme
#54
theferrit32
opened
2 years ago
0
Initiate realtime ClinVar variation
#53
KelseaChang5
opened
2 years ago
0
Produce JSON-LD transformed event to output topic
#52
theferrit32
closed
2 years ago
2
Modify ClinVar DX Topics to be Entity-Based
#51
larrybabb
closed
1 year ago
1
Performance improvements
#50
theferrit32
closed
2 years ago
0
Add dockerfile and cloudbuild file for running application with source and REPL
#49
theferrit32
closed
2 years ago
0
Improve write performance in clinvar combiner
#48
theferrit32
closed
2 years ago
3
Extract variation descendant ids into separate table
#47
theferrit32
closed
2 years ago
0
Add optional env var to combiner snapshot mode to snapshot only up to a particular release
#44
theferrit32
closed
1 year ago
1
Alter output message order in clinvar-combiner to match that of clinvar-raw.
#43
theferrit32
closed
2 years ago
1
Resolve memory usage issue
#42
theferrit32
closed
2 years ago
0
Throw file not found error when clinvar-raw opens reader to file path
#41
theferrit32
closed
1 year ago
1
Fix OOM error on large queries
#40
theferrit32
closed
2 years ago
0
combiner snapshot function hangs after finishing upload
#39
theferrit32
closed
2 years ago
2
Resume from snapshot
#38
theferrit32
closed
2 years ago
2
Create copy of snapshot views in central bigquery project when release message is received
#37
theferrit32
closed
2 years ago
0
Next