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Hi
I was trying to run qc (CentOS with Slurm) and I was constantly getting the error:
```
Traceback (most recent call last):
File "/home/jsanchez-gil/.config/snakemake/cluster/scheduler.py", l…
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**Snakemake version**
5.31.1
**Describe the bug**
```
WorkflowError:
Multiple different external jobids registered for output files of incomplete job 1156 ([None, '1982905']). This job cann…
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In this episode nothing is learned when the min, max and mean lines are ran. It is not clear their purpose.
https://carpentries-incubator.github.io/metagenomics/09-diversity-analysis/index.html
…
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Hi
I got an error, it shows below:
[0 seconds]: STEP10 -> MAPPING READS: 10.mapsamples.pl
Reading mapping file from /home_bif/onnicha/enterobacter_project/metagenome/ecInfants/data/00.ecInfant…
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I noticed the bit in the documentation about suggesting multiple hyperparameters: https://github.com/RasmussenLab/vamb#parameter-optimisation-optional
Is there a grid you recommend we use?
I wa…
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Hi, I am interested in using sourmash to compare entire metagenomes and hierarchically cluster them based on diversity metrics. [There is new work with the "zeta-diversity" metric](https://besjournals…
nmb85 updated
3 years ago
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I'm using metaFlye to identify complete/circular viral genomes from metagenomes. Based on some testing using CheckV, I've found that circular contigs labeled as repetitive are often not true complete …
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Hi,
I can't assemble the CRISPRs.
The following is the command I used.
`crass -o crass_out -l 4 TS01-B10-1_1.fastq TS01-B10-1_2.fastq`
`crass-assembler --velvet -x crass_out/cras…
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Dear Francisco,
Recently, I have tried to use your pipeline to analyse some metagenome data. For the bin, i found I can only get about 30 MAGs of high quality (completeness > 90% by checkM). So I am …
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Thanks for the rapid changes. I am not sure why dada2 has an issue.
My config.yaml is unchanged in the threads section:
threads: 4
```
snakemake
KeyError in line 28 of /ngsssd1/rcug/public…