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From the [Lineage Comparison page](https://outbreak.info/compare-lineages?pango=XBB.1.5%2a%20%5BOmicron%20%28XBB.1.5.X%29%5D&gene=ORF1a&gene=ORF1b&gene=S&threshold=75&sub=true&dark=false), clicking on…
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**Defining mutations:** _(On XBB.1.5.27's defining C22995G/S:T478R)_ > C22329T(S:S256L)
**Query:** C22995G, C22329T, A3309G
**Earliest seq:** 2023-01-25 (Colorado, USA, EPI_ISL_16896184)
**Latest …
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**Description:** XBB.1.9.1/XBB.1.9.2 recombinant, with a big (mostly South Korean) branch with ORF8:I74V and a smaller branch which first gained S:Y200C and an ORF3a frameshift and after that a small …
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### Branch 1:
**Defining mutations:** _(On top XBB.1.5's T17124C > T23018C branch)_ > G21668A(S:V36I) > C6196T > C20823T > C25292T(S:L1244F) >
**Query:** G21668A, C25292T [53 seqs]
**Earliest se…
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Right now, on the page load, https://outbreak.info/compare-lineages loads the variants of concern to compare, which is a decently heavy query.
# Goals:
To improve the page load, we want to remov…
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There may be a sublineage of XBB.2.3 that has convergently acquired S:H47Y (BF.5/BF.7.14 ) plus a couple more of AA mutations (S:D80Y and Orf1b:A241T) , it has likely started to circulate in England, …
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I use a script which reads the files lineage_notes.txt, lineages.csv and alias_key.json. The script checks for consistency before further processing the data. In my understanding, there should by exac…
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It seems that there's a large ’BA.4.1‘ branch on usher which actually contains almost every omicron lineage, especially some of the most recent XBB* lineages in undersampled areas like India.
Shall…
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You'll be able to see the duplicate value fir each designation here.
**XAC** - BA.2* duplicated
https://github.com/cov-lineages/pango-designation/blob/master/pango_designation/alias_key.json#L131
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The line
https://github.com/cov-lineages/pango-designation/blob/e914fca31cf69637f773819c9b4976fb05878c88/lineage_notes.txt#L2665
it was added to the end of the file and not in the right place in l…