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## Update 2021-12-06
To join the nf-core community, please visit https://nf-co.re/join
The most important step is to sign up to the nf-core Slack, which is the hub of the community.
Once ther…
ewels updated
2 years ago
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I am running the UPS data set with the --add_decoy option:
```
nextflow run nf-core/proteomicslfq -r 1.0.0 -profile docker --input https://raw.githubusercontent.com/bigbio/proteomics-metadata-standa…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/samWieczorek/Dapar2
Confirm the following by edit…
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Quantitative Proteomics of the Cancer Cell Line Encyclopedia: https://pubmed.ncbi.nlm.nih.gov/31978347
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Things to do:
- [ ] Create tables showing all data for bulk and single-cell experiments
- [ ] Compare and contrast early and late time points for vulnerabilities
- [ ] Identify reactions that are…
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Following code for launching MoPepGen:
```
sudo docker run -it --rm -v /data/ref/GRCh38/ref_star/:/genome/ -v /data/resources/proteomics/hsapiens/GENCODE/GRCh38.13/release_34/:/proteome/ -v /data/…
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Hey @foellmelanie @subinamehta what would you think of splitting up the proteomics tutorials into subtopics? We could provide some more structure and sub-categories to help learners find the topics th…
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Hello,
I've been trying to apply the Philosopher pipeline to a recently published [CPTAC proteomics dataset](https://www.sciencedirect.com/science/article/pii/S0092867420314513). The workflow appear…
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Everybody is welcome to contribute a package. Simply reply to this issue and you will be added to the bioconda team.
**Edit:** *After you post here, we will email you an invitation through github t…
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This issue tracks the status of long workshops.
A passing badge is expected to reflect that the workshop:
- can be built as an R package
- can deploy pkgdown documentation to the `gh-pages` bra…