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Any part of a script that generates ".sh" files to queue them with sbatch after generating some data neccesary to run these ".sh" files could include generating said data into the ".sh" files themselv…
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Hi,
When running a single-end Illumina fastq file, I get the following error message:
Error occurs when running "builder build" for k = 21; please refer to DBG_MG/M7_assembled/log for detail [Exit cod…
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Hi Mitchell,
the below way of constructing the `qsub` call is not compatible with PBS Pro, which only supports the non-default values `oe` and `eo` for merging stdout/stderr (`-j`):
https://gith…
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Using tag `cime6.0.15`.
It looks like nothing is getting passed to the `qsub -m` flag, when it should be `qsub -m "n"`:
```
Submitting job script qsub -q share -l walltime=06:00:00 -A P93300641…
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I think I've initially posted in the wrong repo. Please see https://github.com/snakemake/snakemake/issues/2802#issuecomment-2049297585
Especially as `--executor none` works fine, but my profile usi…
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Starting with setup in #1, I did this:
```
pip install 'ibis-framework[duckdb]'
```
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**Description**
I tried to build and run CMAQ-5.4.0.2/CCTM using parallel io, and encountered runtime MPI errors, e.g., Invalid communicator, error stack
So I wonder what is the wrong through my st…
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Hello,
I would like to add a new PBS argument to my CESM job submission scripts. However, when I use `./xmlchange` to add a new argument to `BATCH_COMMAND_FLAGS`, it seems to ignore the other PBS ba…
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Hello,
I am trying to run canu on linux and it ends very quickly ("lickety-split"). I want to assemble a 60m sized genome.
This is my command:
#!/bin/bash
#PBS -q huchond
#PBS -o out_canu_HSA2_DN…