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swvanderlaan
/
MetaGWASToolKit
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
https://swvanderlaan.github.io/MetaGWASToolKit/
MIT License
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MetaGWASToolKit updates
#45
xEmz
opened
1 month ago
0
Update metagwastoolkit.conf
#44
xEmz
opened
3 months ago
0
Fixes to parser.harmonizer
#43
MVPuijk
closed
8 months ago
0
Develop
#42
MVPuijk
closed
8 months ago
0
Clumper fixes
#41
MVPuijk
closed
10 months ago
0
Develop
#40
MVPuijk
closed
1 year ago
0
update params maker
#39
xEmz
closed
1 year ago
0
Params generator and new parser/harmonizer
#38
MVPuijk
closed
1 year ago
0
Develop
#37
MVPuijk
closed
1 year ago
0
Develop
#36
MVPuijk
closed
1 year ago
0
(Plotter) scripts that rely on generating data before queuing slurm command could be sped up
#35
MVPuijk
closed
1 year ago
1
Develop
#34
swvanderlaan
closed
1 year ago
0
Develop
#33
swvanderlaan
closed
1 year ago
0
Devel
#32
xEmz
closed
1 year ago
0
update parser script
#31
xEmz
closed
1 year ago
0
fix VCFparser script
#30
xEmz
closed
1 year ago
1
resource.vcfparser.pl script edit
#29
xEmz
closed
1 year ago
0
Merge pull request #27 from swvanderlaan/master
#28
swvanderlaan
closed
1 year ago
0
merge develop with master
#27
swvanderlaan
closed
1 year ago
0
Slurm conversion
#26
swvanderlaan
closed
2 years ago
0
Stratified QQ plots with lambda per bin
#25
swvanderlaan
closed
1 year ago
1
Array jobs
#24
swvanderlaan
closed
2 years ago
0
Create CODE_OF_CONDUCT.md
#23
swvanderlaan
closed
4 years ago
0
Manhattan-plot: speed gain using #ggrastr
#22
swvanderlaan
closed
4 years ago
1
Meta-Analysis: add in unit of exposure for MR-base input-files
#21
swvanderlaan
opened
6 years ago
0
Meta-analysis: total tallies over variants
#20
swvanderlaan
opened
6 years ago
2
Meta-analysis: add in trans-ethnic option
#19
swvanderlaan
opened
6 years ago
1
Meta-analysis: add in option to include non-autosomal chromosomes
#18
swvanderlaan
opened
6 years ago
0
Meta-analysis: automatic checking of each cohort
#17
swvanderlaan
closed
1 year ago
1
Meta-analysis: param-file generator
#16
swvanderlaan
opened
6 years ago
1
Meta-analysis: add --verbose function
#15
swvanderlaan
opened
6 years ago
0
Meta-analysis: VEGAS pathway enrichment analysis
#14
swvanderlaan
closed
1 year ago
1
Manhattan-plot: change orientation
#13
swvanderlaan
opened
6 years ago
0
Manhattan-plot: fix outlining of non-autosomal chromosomes
#12
swvanderlaan
closed
4 years ago
1
Manhattan-plot: MIAMI plotting, aka stratified plotting.
#11
swvanderlaan
opened
6 years ago
1
Manhattan-plot: add gene name to peaks
#10
swvanderlaan
opened
6 years ago
1
Manhattan-plot: highlight specific region.
#9
swvanderlaan
opened
6 years ago
2
Manhattan-plot: change title name
#8
swvanderlaan
closed
4 years ago
1
Manhattan-plot: specify test-statistic
#7
swvanderlaan
opened
6 years ago
0
Manhattan-plot: specify output name
#6
swvanderlaan
opened
6 years ago
2
QQ-plot: maximize -log10(P)
#5
swvanderlaan
opened
6 years ago
0
Add in functions based on Winkler et al. (frequency plot among others)
#4
swvanderlaan
opened
6 years ago
0
Clumps are 'cleared'
#3
swvanderlaan
closed
6 years ago
1
Add proper 1000G phase 3
#2
swvanderlaan
closed
1 year ago
1
Fixes
#1
swvanderlaan
closed
7 years ago
0