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Hi Iam trying to run CIRIquant using the following command
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`CIRIquant -t 4 \
-1 read1.fastq \
-2 read2.fastq \
--config config_fil…
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Hi all,
Since I'm vaguely "representing" AMR at the comparative computational semantics meeting in Berlin, I figured I'd shared the webpage, which is now up with some our our analyses: http://moin.…
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Part of GATK
> SplitNCigarReads developed specially for RNAseq, which splits reads into exon segments (getting rid of Ns but maintaining grouping information) and hard-clip any sequences overhanging …
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I have human RNA-Seq dataset it has two different barcodes in the different folder. I aligned with that command
minimap2 -ax splice -uf -k14 ref.fa direct-rna.fq > aln.sam
I try to quantify and coun…
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Hello,
Thank you for developing this nice tool.
I'm interested in analyzing allele-specific expression (ASE) in my single-cell RNA-sequencing (scRNA-seq) data. This data comes from offspring tissues…
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Hi Jean,
I know these must be on your list already, but was wondering if you had a timeline or roadmap for their implementation. Both have been important to me personally in order to 1. make the c…
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https://github.com/aubio/aubio/blob/25db68c4eefe354f18c58a47eeb5643fc534eb81/src/tempo/tempo.c#L135
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The constraint language is not fully supported in assertions.
```
Test case:
a ?
xor b 1
c ?
d ?
[never d after c ]
assert [all a1 : a | all b1 : a1.b | never b1.d after b1.c]
```
I…
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The [Solid Web Access Control ontology](https://www.w3.org/ns/auth/acl) - described in [Solid WAC](https://solidproject.org/TR/wac) allows one to describe essentially rules stating which sets of peopl…
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Hi!
I'm running BASiCS with a large dataset, with 20-30K cells per sample. For noise quantification, I down-sampled it to ~5K cells. This data has no spike-ins. If I understand correctly, batch infor…