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_Transferred from sars-cov-2-variants/lineage-proposals#633_
**Defining Mutations:** `HS.1` > `T10084A` > `C6628T` > `C10252T, T22928C(S:F456L)` > `G28077T(ORF8:V62L)`
**Query:** `C6628T, T10084A,…
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XBB.1.9.1> C21998A(S:Q146K)> A3069G(Orf1a:D935G)> 5 nuc saltation: A2647G, C11455T, A17615G(Orf1b:K1383R), G27225A, G27870T(Orf7b:E39*)
Query: A2647G, A3069G, A17615G(edited)
Earliest Sequence: 03-1…
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XBB.1.5.24+S:L216F(C22208T)
GISAID query: C2710T,C22208T,T23018C,G27915T
No. of seqs: 98(South Korea 1 Sweden 1 Reunion 1 UK 2 Mauritus 93)
First seq: EPI_ISL_17245028, Mauritus 2023-1-30
Late…
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_Taken from **Branch 2** of Multitask sars-cov-2-variants/lineage-proposals#519_
**Defining Mutations:** `EG.5.1.3` > `C23757T(S:T732I)`
**Query:** `C1889T, C22570T, C23757T`
**Earliest seq:** 20…
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I find some 148 seqs having del27903_27910, which seems to be an artefact or frameshifted Orf8.
These seqs start from 2020 and across various variants.
84 of the 148 seqs (57%) are XBB* with G27…
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From (https://github.com/sars-cov-2-variants/lineage-proposals/issues/104)
FL.13+C21904T,T6334C,C7843T+A22629C(S:K356T)
GISAID query: C21904T,T6334C,C7843T,A22629C
No. of seqs: 26(China 24 Singap…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/672
Defining mutations:
**XBB.1.16** >> > C29386T > A25410G > **Orf1a:P748L** (T2242C),**Orf1a:E972K** (C2508T), G3…
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There may be a XBB.1.16.21 sublineage with ORF1a:G963D (G3153A; NSP3:G145D) first detected in Utrecht, Netherlands.
As of 2023-08-25, Cov-Spectrum reports 23 good-quality (24 total) XBB.1.16.21+ORF…
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*Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/580
Defining mutations (EDITED):
HK.3>C22033A (S:F157L)
GISAID query: G5720A, G13627A, G22927T, C22033A (EDITED)
…
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https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2021.26.24.2100509
The appendix.