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## Description
PKPD antibiotics (one compartment PK with adaptive resistant PD model) model fitting to (naive pooled) data of PK (plasma concentration) and PD (bacterial CFU time course), data ob…
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`MAR01044` has two subsystems ("Heme synthesis" and "Porphyrin metabolism") in `model/Human-GEM.yml` (on both the main and develop branches), but only one subsystem ("Porphyrin metabolism") in `model/…
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Version 1.3.3 (top) has correct initial concentration for fish model from test suite, but in 1.4.0 the initial concentration is zero:
![image](https://github.com/spatial-model-editor/spatial-model-…
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I'm pretty new to github and modeling so I'm not sure if this is the best place to put this, but here it is:
I have been trying to use CobraMOD to improve the model for this plant called field pen…
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---
id: vcell
version: 7.5.0.80
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.5.0.80/biosimulators.json
specificationsPatch:
version: 7.5.0.80
image:
url: ghcr.io…
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Hello,
I am using the python API of libSBML to judge whether there is an error of an SBML file using the function getNumErrors() != 0 (https://github.com/SunnyXu/SBMLDiagrams/blob/main/SBMLDiagrams/p…
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When trying to convert an SBML model to Antimony with tellurium 2.2.2.1, I get errors that indicate that tellurium is limited to SBML L3V1, e.g.:
```
is not valid in SBML Level 3 Version 1.
Th…
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Hello,
Nice package, thank you very much!
There might be an issue with how you split your reactions that causes reversible parts of reactions to drop out from the enzyme constraint.
I was lo…
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VCML format option export has been disabled as it was incomplete/not correct/not tested. It is needed for both CLI execution of models/simulations incompatible with SBML export and for deploying the …
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We disabled a bunch of tests from state_saving.cpp because they started with a 'load'. We can fix these by starting them by loading a normal rr instance with an SBML model and saving it.