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Hello! Thank you very much for this useful tool and congratulations on the recent publication of your paper!
I was trying to run the `calculateSMI` function on some scRNA-seq data. I ran into the …
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https://mp.weixin.qq.com/s/QCqTptYSd8BjdtmIPBl0Kw
ixxmu updated
2 months ago
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Hi Alex,
I used STARsolo (version=2.7.10a) to align scRNA-seq reads to hg38 genome.
```
$STAR --runThreadN $thread \
--genomeDir STAR \
--readFilesIn raw/${sample}_2.fastq.gz raw/${sa…
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Currently the display curator automatically chooses a dot size for static scatter plots based on the number of dots being plotted. this works well in most situations, but causes issues in some cases -…
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**From:** John Pham
**Email:** john.pham@umanitoba.ca
**Server IP:** 10.142.0.16
**Msg:** Hi,
I was wondering if there was a way to download/access the raw dataset or even Seurat object create f…
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Hello,
First, thank you for developing this method and building easy to use code. I've ran the code to hla-type 10X scrna-seq samples and so far it's working great at genotyping my individuals.
Howe…
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Hello,
I am using SATURN to integrate cross-species scRNA-Seq data. I am able to run `train-saturn.py` and it seems to be doing well until I get this error :
"../../train-saturn.py", line 820,…
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Hello,
I'm working with multiple scRNA-seq samples. Can I aggregate them using CellRanger aggr and then apply CellBender for background RNA correction?
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# 生信爱好者周刊(第 125 期):
这里记录每周值得分享的生信相关内容,周日发布。
本杂志开源(GitHub: [openbiox/weekly](https://github.com/openbiox/weekly)),欢迎提交 issue,投稿或推荐生信相关内容。
[「生信周刊讨论区」](https://github.com/openbiox/weekly/discuss…
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Hi Aleksandr,
First of all I want to say I think you're doing crazy important stuff. I've been suggested to use SingleR, but as I've found it's not accurate ~1/3-1/2 of the time, especially with my…