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Hi,
Is there a programmatic way to fetch bam URLs (from SRR IDs)? I need them to download original bam files (aria2c or wget) for scRNAseq datasets.
Thanks and good day.
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Hi there,
First of all, thank you for this great package! It has been very helpful for my graduation project so far.
I am currently following the bbknn tutorial notebook, but I get an error at the…
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Hi,
I met an issue that I had data from scATACseq and scRNAseq with same cells among multiple samples. Now I try to integrate these data. I first did the _merge_ steps for the scATACseq data followe…
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Dear all,
I am trying to analyze a public [dataset](https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA407224&o=acc_s%3Aa), created with the C1-STRT protocol, using umi_tools in order to replicate…
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https://mp.weixin.qq.com/s/M0xleUL5NZXCl8McoYN55A
ixxmu updated
7 months ago
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Hello - I am testing out the tool with the provided scRNAseq test data in the input folder- and am running into this below issue.
Thanks for providing this tool!
[1] "(4/7) Constructing the int…
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```
╭─────────────────────────────────── Oops! The 'cellranger' MultiQC module broke... ────────────────────────────────────╮
│ Please copy this log and report it at https://github.com/ewels/MultiQC…
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Hello
I am eager to try SingleR to identify cell subset from scRNAseq data.
I followed this tutorial
https://bioconductor.org/packages/devel/bioc/vignettes/SingleR/inst/doc/SingleR.html
but I get…
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Hi
Previously I successfully run the deconvolution on one of my four samples also the demo data works as well. However, for my other three data, I failed when creating the CARD object. The error me…
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CL ontology has many cell types named with the DE genes. This is specially true with cells from the immune system, but many new cell types from other tissues coming from scRNAseq datasets are subsets …