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Hello,
I recently uploaded a few Mpox sequences into the the web version of Nextclade.
I noticed several of these had a OPG069:45-167 frame shift flagged.
![Screenshot 2024-09-04 120716](https:/…
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```
// Slice
const string ss3 = "\\\\U\\u\\"; /* \\U\u\ */
const string ss4 = "\\\u0041\\"; /* \A\ */
const string ss5 = "\\u0041\\"; /* \u0041\ */
```
This results in invalid Java-gener…
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we cant sort by rank.
This is the order the sequences are returned to me:
```
3624472..3624691-
3624748..3624979-
3634939..3635074-
```
but since its negative strand im not positive i…
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KP.1.1.3> C15120T, G18105T(Orf1b:Q1546H), G28396A(Orf9b:G38D)
Query: C15120T, G18105T, G28396A
Earliest sequence: 04-28 Rhône, Auvergne-Rhône-Alpes, France EPI_ISL_19132815
Latest sequence: 08-14…
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We should consider alternative approaches for DNA embeddings. While one-hot encoding (OHE) combined with dense layers is effective, there may be opportunities to enhance this by incorporating k-mer em…
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**Describe the issue**
I am executing this command as per 'box 2' in Nat. Biot. 2024 article:
~$ kb ref -i fpa_index.idx -g fpa_t2g.txt -f1 fpa_cdna.fasta cds_from_genomic.fasta genomic.gtf
**W…
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- [ ] Create new sequence for dummy sequence `arm1`
- [ ] Move the tripmine out of the view in HD `place` sequence
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By VirologiaHUCA
Description
Sub-lineage of: XBB.1.5
Earliest sequence: 2023-01-04
Most recent sequence: 2023-03-24
Countries circulating: Spain (12 sequences, 10 of them in Asturias), USA (2), …
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Dear @iferres and @mgimenez720 ,
Thank you a comprehensive analysis of replication region of plasmids via BLAST, HMM search of rep and RNA sequences. I wanted to ask is it possible to extract the …
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Some calendar app and caldav support external calendar subscription.
It can save an URL for icalendar resource (`.ics`) on web.
for example: `webcal://www.calendarlabs.com/ical-calendar/ics/76/US_H…