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Hi folks,
We've been trying out a few somatic CNV callers for a while now and we're quite happy with PURPLE (PUrity & PLoidy Estimator) by the Hartwig Medical Foundation. Some helpful links:
* P…
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Hi!
Thank you for a very interesting framework!
I am trying to run some training on a custom dataset with the 3D Unet and I keep getting CUDA out of memory errors. I am using a Nvidia GeForce …
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Hi @jlevy44
How do I know what's the status of the preprocessing procedure during and after execution and what are the outputs I should see in terms of files being written?
The following ran fo…
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Hi,
I am doing some parameter optimization with CNVkit (v0.7.5), which is why I replaced the 'batch' command by the individual commands as described in the documentation:
- target
- antitarget
- cove…
nriMH updated
4 years ago
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When I run the above code which I copy the kits19 example in this repo, it will throw the error.
```py
import tensorflow as tf
config = tf.compat.v1.ConfigProto()
config.gpu_options.allow_growt…
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Ensembling it with the tumor predictions of another network (i.e. the sigmoid network) can boost the horrible tumor segmentation performance.
The sequence of PR would go from #25 -> #6 -> I/O fixes f…
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Iam trying this approach on 2019 brats dataset with same model. The VAE dice coefficient (reconstructed image ) is around 0.90 but the dice coefficient for the segmentation label is 0.0000e+00.
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I am trying this model on brats 2019 dataset. Everything was okay but during fitting the model it is giving the following error. Can someone help me..
Here is the error
**ValueError: Error when…
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Hi CellPose team,
Thank you for your amazing tool! I found it very promising. I have some questions about the application of this tool in practice.
1. What kind of images work best for the pre-t…