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I'd like to set a reference for the sam/bam alignment in one go, as for example in IGV.
Currently, it's only possible to add a reference to each contig view individually, and when using a multifasta …
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Hi,
I'm getting an error while the data is read:
```
#
# =============================================================================================================================
_____ _…
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Hi all,
I am trying to use quast with a reference (360Mbp) and one new assembly (450Mbp). Can the size be a problem? The reference come from illumina reads and the new assembly from pacbio. It is run…
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Hi!
I'm using RESPECT to evaluate 10 octopus genomes - genomes that are expected to be human-sized or larger and repeat rich. Years ago people thought the genomes would be duplicated - but this has…
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**Overall question**
I was wondering about model choice (i.e., haplotypes, transcripts, or haplotype-transcripts).
**Model choice**
I have RNA-seq data for which the diplotype of each indivi…
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[small_test_data2.maf.gz](https://github.com/cmdcolin/mafviewer/files/10264095/small_test_data2.maf.gz)
Hello, I used the script maf2bed.pl to convert the maf file output by cactus software to bed …
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Hello,
We are currently attempting to train a remora model for a modification that is currently not present in the list of pretrained models. To this end, we have generated reads containing canonic…
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Hello VG team,
Thank you very much for your support and I apologize if this is not the right place to ask for help.
I am trying to genotype some variants using vg autoindex + giraffe + pack + ca…
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Hi there,
I am trying to run Hisat2 on FASTA files and, I've encountered an issue. It seems that HISAT2 can't read the index files, however, I'm pretty sure it's not due to typos. I have re-downloa…