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Hi, I tried magic-blast to align a toy cDNA to a toy genome, I could either produce alignment of whole sequence (in blue) or the first exon only (in red).
Commands used to produce results
1. **Onl…
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I'm constantly getting a "Gateway time out" error when I try to access http://labshare.cshl.edu/shares/gingeraslab/www-data/dobin/STAR/STARgenomes/
Is there anyone else having the same problem?
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We have roughly 500k GO Annotation edges that aren't making it into the final KG because we aren't yet ingesting [Aspergillus nidulans](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=In…
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Hi,
I have two questions,
1) The whole LTR_retriever pipeline on single computer node is too slow for large genome, so I want to run some steps parallelizing. But I found that I can not get Alig…
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Cactus is a reference-free whole-genome multiple alignment program.
Repository: https://github.com/ComparativeGenomicsToolkit/cactus
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Hello @hasindu2008,
Thank you for developing slow5tools - it's been really useful to compress and store ONT data!
Apologies if this is a naïve question but I thought it was possible to basecall …
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Hi all,
Has anybody had problems with illumiprocessor not removing adapters and barcodes? I ran phyluce v1.7.1 straight through to the tree building step with RAxML-NG, and ran into no issues.
Th…
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Good morming Igor,
I have 7 samples 5 normal and two tumor.
The bed file has already bee added and is the same one as I used last time.
-rwx------ 1 torunp01 hackerlab 11302942 Jul 7 12:12…
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I’ve been trying to understand the index data structures. I’ll summarize here for reference, but will also write down a suggestion for how to perhaps reduce memory usage.
1. A vector of randstrobes…
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Hi Felix,
it seems like that bismark runs well, but I miss the mapping information in the reports. Actually, I'm not sure wether mapping information would be to expect in the bismark report file. The…