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Dear Authors,
I noticed that the HMF pipelines also reported ecDNA events. After analyzing our osteosarcoma PDX WGS data, I found that many samples (90%) exhibited chromothripsis events (ShatterSee…
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Hi,
Maybe I am missing the option, but how can include a reverse primer binding site to make schematics of PCR amplicons (I can only find the "forward" Primer Binding Site?
Thanks!
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Hi,
I have a very puzzling demultiplexing problem which I have no idea why it occurs.
I have a couple of nanopore reads with bc1, bc2, bc3 but when I run the entire set, all go to the "None" bar…
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## Template Fixes:
## Specification Changes:
| Field | Change |
| --- | --- |
| `experimental _protocol_field` | New field |
| `experimental_specimen_role _type` | New field, new picklist…
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**Bug Description**
ruuning ancombc on QIIME2-metagenomics-2024.5 on Linux.
Error: package or namespace load failed for ‘phyloseq’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load sha…
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I found more number of ASV when using 2022.10.backbone.full-length.nb.qza file directly in QIIME2 for V3-V4 sequence taxonomy prediction in comparison to using 2022.10.backbone.full-length.fna.qza via…
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Greetings! I have a Fasta file containing a few dozen amplicon sequences, and I would like to use InSilicoSeq to simulate targeted sequencing of these amplicons. I had originally used `--mode kde --mo…
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Hi,
I recently learned for `taxa` and `taxize` and have been exploring them a bit today, as I am trying to merge microscopy data with an metabarcoding data so that I can compare what is observed by m…
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I have a setup of GSCF and SAM. Notification is set to true. I try to import a study. I first fully import it into GSCF (including assays). After this I want to add data to this study in SAM. Since th…
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### Describe the issue:
The result of `sum(some_array)` in NumPy 2.0 can differ from the 1.x series, and result in an overflow error. I suspect this is related to the type promotion changes with NE…