-
Hi,
looks interesting. Is there any reason it could not handle nanopore data, eg output from modbam2bed ?
https://github.com/epi2me-labs/modbam2bed
We typically convert the output into bedg / b…
-
Hi,
I have a question regarding the use of an alternative mapper like graphmap for preprocessing of data fed into remora.
Basecalling/mapping with dorado, which uses minimap2 internally, with …
-
Dear Authors,
When playing with your provided fast5, we occasionally observed several reads are continuously reported as "no_map" in the RU log even with many iterations and long lengths (>30, >7kb).…
-
Hello community,
I am quite new to bioinformatics in general and I am now in the process of basecalling with Dorado, I manage to install the latest version of it through the command line, but when …
-
# Issue Report
## Please describe the issue:
I want to correct reads.
## Steps to reproduce the issue:
```shell
cd /lizardfs/guarracino/tools/
wget -c https://cdn.oxfordnanoportal.com/softwa…
-
I wanted to provide some performance metrics for someone who is running dorado on Windows 11 eigher using the Windows binaries (.exe) vs the Linux binaries under the WSL
My GPU is limited to 6GB o…
-
Hi,
Some weeks ago, we did a sequencing run to test ReadUntil without reference mapping and basecalling. Everything went fine and I could recognize a peak at 500bp as expected. But after 3 hours I …
-
I am trying basecalling and after feeding the prompt with the commands to run my basecalling I am getting the CUDA device requested but no devices found.
By reading on the Dorado recommendations I…
-
How do we know the corresponding Dorado standalone version that corresponds to a particular Dorado server version? For instance, when Dorado server v7.2.13, how do we deduce the Dorado standalone vers…
-
Hi, I would like to ask for help in solving my problem with flye.
After installing flye in my ubuntu terminal (to be more precise, I created an environment with conda and installed flye there), I f…