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Would rather not need to hard code the list of IDs (will do for the nonce), but have this embedded in the ontology itself.
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While parsing GAFs etc ontobio will construct expressions for each line and send them to an inference engine to determine if the annotations are (a) taxonomically invalid or otherwise logically incohe…
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https://github.com/RTXteam/RTX/issues/2339
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This issue is essentially the same as #552 and #553 except for isopropranolol - gene - allergic disease.
 is described in this paper https://www.nature.com/articles/s41586-023-06592-6 . Among the analyses presented there is an association analysis between pr…
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Aggressive systemic mastocytosis (ASM) is a rare disease. I have a family member who was diagnosed with it on 06/09/23.
ChEMBL has two FDA approved drugs prescribed for this: MIDOSTAURIN (Approved i…
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From LinkML meeting on 02/26/2006
I some cases the `meaning` of an enum may map to multiple ontology terms. E.g., SNOMED and NCIT both have URIs for the same (lexically speaking) cancer. We may wan…
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strain:of_NO_NCBITaxon_ID biolink:capable_of EC:1.11.1.6 RO:0002200 bacdive:166308
strain:of_NO_NCBITaxon_ID biolink:capable_of EC:3.1.3.1 RO:0002200 bacdive:…
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The proposed cross-cut metadata model, aka DATS, is available as machine readable JSON schemas. Instance files can be serialized as JSON and linked data support is provided via one or several JSON-LD …
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Hi. I have used pronto for the last few months. First of all, kudos to the coders, it's great work.
Coming to the issue I am facing, I initially thought that pronto is able to extract all the relat…