-
The **cBioPortal Webinar 4: Group Comparison** is very helpful but I have a few suggestions to improve the video and **to improve the web portal software**:
1. At 20:20 you may show the "currently …
-
https://cbioportal.mskcc.org/results/oncoprint?cancer_study_list=mskimpact&tab_index=tab_visualize&case_set_id=mskimpact_all&Action=Submit&gene_list=NRG1
-
- [ ] alteration_driver_annotation is a secondary table that can be related to any primary alteration table to store these annotations. Fusion data used to be supported when it was stored in mutation…
-
Hello,
I was loading a study using the function `loadStudy` and noticed that most data files are not being added to the `ExperimentList` of the `MultiAssayExperiment` object, but are loaded as meta…
-
In both the Mutual Exclusivity tab and the Comparison page/tab, we use 1-side Fisher's Exact test. [A user](https://groups.google.com/g/cbioportal/c/WbPzItsK_Vc/m/wlTdzmf3AQAJ) asked us whether a 2-si…
-
We should always be lifting over information from the old human genome build (hg19) to hg38; i.e. coordinates, gene symbols, etc. Make sure to check the matrices we're using the proper aliases from th…
-
```
SEVERE: Servlet.service() for servlet [SpringDispatcher] in context with path [] threw exception [Request processing failed; nested exception is org.cbioportal.genome_nexus.util.exception.RefType…
-
**Describe the issue**
I would like to use the Somatic Interaction function of the maftools with my pre calculated data which was obtained from cbioportal
The small subset of my data looks lik…
-
## Done Condition (What do we need? Why do we need it? Keep this is small as possible!)
GENIE study imported 3-5x without disconnect
## Technical Description (How are we going to achieve the above)
…
-
#### What data file(s) does this issue pertain to?
In the v12 release, we have added new samples listed in the v12 histologies file, and hence we need to update case IDs on PedcbioPortal for new URL …