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[Unable to run MAVIS on an HPC](https://github.com/bcgsc/mavis/issues/228) I've now resulted to trying to run it on my laptop.
However, I get an error about `Bio.Alphabet` for the recommend install…
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### MAVIS version: 2.2.6
### Python version: 3.8.0
### OS: CentOS Linux release 7.5.1804 (Core)
I have downloaded helper script from mavis and have followed the [installation steps from the ensem…
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Hey! Thank you for developing BRAKER2.
I am trying to annotate a genome _de novo_ of a _Drosophila_ species.
I have:
1. A softmasked genome assembly
2. RNAseq evidence. Aligned to the genome us…
tkjmk updated
3 years ago
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Get networks from here: http://www.weizmann.ac.il/mcb/UriAlon/download/collection-complex-networks
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Python 3.6.10
deeptools 3.1.3
Hi,
I have ChIP data of two of the histone variants (HTZ-1 and HTAS-1) of _C.elegans_. I want to see if there is any enrichment around the promoter or TSS or gene bo…
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Is there a way to retrieve a list of PDBs for a given organism?
Similar to PDB's internal "Source Organism Taxonomy Name".
mirix updated
3 years ago
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### Prerequisites
+ [x] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)?
* [x] make s…
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with the new genome digest calculation during initialization, we're now using henge in the back-end. Unfortunatley when I ran this on some real data, soemf asta files (I presume the larger ones) are g…
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```
Module kallisto raised an exception: Traceback (most recent call last):
File "/Users/lucho/opt/anaconda3/lib/python3.8/site-packages/multiqc/multiqc.py", line 569, in run
output = mod()
…
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In test session https://curation.pombase.org/uniprot/curs/a606c5a2c39fa9b3
![uniprot-canto-no-genes-1](https://user-images.githubusercontent.com/90474/79706233-a63bbb00-830c-11ea-891e-da753e86272a.…