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refgenie
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refgenconf
A Python object for standardized reference genome assets.
http://refgenie.databio.org
BSD 2-Clause "Simplified" License
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All commands fail due to a 404 error for openapi.json
#146
ialbert
closed
4 months ago
1
Adopt yacman v1
#145
nsheff
opened
6 months ago
0
New refgenconf requires python 3.8
#144
nsheff
opened
1 year ago
1
allow dashes in genome names
#143
mirpedrol
closed
1 year ago
1
Support for Python 3.10
#142
fabianegli
opened
2 years ago
3
Populate of refgenie registry paths doesn't allow dashes in the genome name
#141
mirpedrol
closed
1 year ago
1
Issue 139 raise more specific error for non existing asset
#140
rafalstepien
closed
8 months ago
3
Refgenconf should give a more specific error when an non-existing asset is queried
#139
nsheff
opened
2 years ago
2
Incorrect web link in upgrade message
#138
rcorces
opened
2 years ago
0
Dev
#137
nsheff
opened
2 years ago
0
Fix setuptools, release 0.12.2
#136
nsheff
closed
2 years ago
1
v0.12.1
#135
stolarczyk
closed
2 years ago
1
Missing dependency on tqdm
#134
natefoo
closed
2 years ago
2
get_tag_seek_keys() returns None - leading to potential TypeError: 'NoneType' object is not iterable
#133
jpsmith5
opened
2 years ago
2
revamp looper plugin to accomodate multiple genomes
#132
nsheff
closed
3 years ago
1
Remove RunTimeWarning
#131
nsheff
closed
3 years ago
2
v0.12.0
#130
stolarczyk
closed
3 years ago
5
Looper plugin
#129
nsheff
closed
3 years ago
7
A list of seek keys
#128
nsheff
closed
3 years ago
2
v0.11.1
#127
stolarczyk
closed
3 years ago
2
Refgenie populater plugin
#126
nsheff
opened
3 years ago
0
tags in `RefGenConf.populate`?
#125
stolarczyk
closed
3 years ago
2
Release 0.11.0
#124
nsheff
closed
3 years ago
8
alias links to log files appear to be wrong
#122
nsheff
closed
3 years ago
4
using listr in remote mode
#123
stolarczyk
closed
3 years ago
1
seek remote assets return value
#121
stolarczyk
closed
3 years ago
1
Improve error message for undefined alias
#120
nsheff
closed
3 years ago
0
Database back-end for refgenieserver configuration
#119
nsheff
opened
3 years ago
2
better missing ASDs communication in refgenie compare
#118
stolarczyk
closed
3 years ago
3
get ASDs.json (if missing) on any asset pull
#117
stolarczyk
opened
3 years ago
3
Fix deprecation warning
#116
nsoranzo
closed
3 years ago
2
failed refgenie pull breaks the config
#115
stolarczyk
closed
3 years ago
1
Config upgrade bug: missing ASDs for genomes with no local fasta assets
#114
xuebingjie1990
closed
3 years ago
0
First pass at populator and looper plugin
#113
nsheff
closed
3 years ago
14
upgrade error on broken URL
#112
nsheff
closed
3 years ago
6
Dev config upgrade
#111
xuebingjie1990
closed
3 years ago
30
init should create data and alias directories
#110
nsheff
closed
3 years ago
1
v0.9.3
#109
stolarczyk
closed
3 years ago
1
list function overloads python's built-in type
#108
nsheff
closed
4 years ago
2
error in list_assets_by_genome
#107
nsheff
closed
4 years ago
3
FileExistsError in initialize_genome
#106
stolarczyk
closed
3 years ago
0
Memory use of genome digest init
#105
nsheff
closed
3 years ago
35
allow forcing gzipped fasta
#104
nsheff
closed
4 years ago
0
KeyError: 'aliases'
#103
nsheff
closed
3 years ago
1
v0.10.0
#102
stolarczyk
closed
3 years ago
1
update dev
#101
stolarczyk
closed
4 years ago
0
v0.9.2
#100
stolarczyk
closed
4 years ago
1
update dev
#98
stolarczyk
closed
4 years ago
0
v0.9.1
#97
stolarczyk
closed
4 years ago
1
bug in get_remote_data_str ?
#96
nsheff
closed
4 years ago
6
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