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It produces a JSON-LD serialization that looks like this:
```json
{
"@id": "https://example.com/custom-namespace/datasetversion/.",
"@type": [
{
"@type": "http://www.w3…
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Descriptions shouldn't have an example in it.
"Description of reaction conditions and components of PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...'"
recommended change
…
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**Describe the bug**
How do different INSDC repos use different linkml slots to key MIxS terms?
**Additional context**
ENA uses the "long name"(=title) to key MIxS terms
NCBI uses the "short nam…
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It only contains the ontology parts, and not a single `SchemaElement` subclass.
No idea...
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New attempts to organize elements in the nmdc-schema with `is_a`, `slot_group`, `in_subset` or even YAML # comments very much appreciated
These grouping must be exhaustive, meaning that there must …
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After re-iding is complete we can remove the extra logic to support legacy IDs This is anything that generates ...accepting_legacy_ids...
Depends on: https://github.com/microbiomedata/issues/issues/…
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When doing a fresh install of bmt, it pulls in latest Linkml (v1.6.1) and that generates the following error when creating a new toolkit object :
```
...
self.exact_mappings = [v if isinstance(…
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**Describe the bug**
specifying `default_prefix:` prevents `gen-jsonld-context` from emitting classes
**To reproduce**
``` yaml
id: https://sparc.olympiangods.org/sparcur/schemas/1/sparc
title:…
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Looking into #19 it is clear that proper semantic annotation is critical. Therefore I propose the following rules:
- any ontology component must have a `class_uri` or `slot_uri` that points to an e…
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Query : Find leaf node CL terms with nested cell sets underneath
Cypher query for leaf nodes:
```cypher
MATCH p=(c:Class:Cell)