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**Collection/dataset this task is for:**
- file name - 19 filtered h5 + 19 raw h5
- link to existing collection in cellxgene
- DCP wrangling [ticket](https://github.com/ebi-ait/hca-ebi-wrangler-cent…
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Hello,
I am trying to use BPCells to work with a large connectivity matrix, and ideally I would need to apply the eigs_sym() function from RSpectra to extract the top k eigenvalues/vectors from tha…
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I often get emailed about non-continuous trait data that fundiversity doesn't handle.
I wonder if we should write a full vignette to show the general workflow, an include this in the error message fo…
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Hi, I am using GENOVA to calculate insulation score. the code is
hic
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Hi,
I'm getting some false positives results with inferCNV when I try to detect CNVs from myeloid cells using lymphocytes cells as reference. I tested this with a simple PBMC dataset from healthy i…
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Hi all,
Sorry if this has already been addressed in a previous comment and I missed it. But I've successfully loaded files from Seurat into Monocle, now I'd like to perform the pseudotime.
…
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Hello,
I use scmap to annotate cell types based on a reference annotation dataset. The reference annotation dataset was downloaded from celldex. However, I encounter an error when I choose HumanPr…
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Hi, I have tested SPAGATE-tensorflow on 2 replicates(2 slices) of one stage, but when I load the denoised count matrices into Seurat, I found severe batch effect than raw count matrices.
Can you give…
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Despite making it easy for users to formulate and solve a wide range of optimization problems, JuMP provides little support for the users who make mistakes, or tools for advanced users to debug proble…
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It would be nice to be able to check if a function is pure and fast for free at runtime using effect analysis. `is_pure_and_fast(f, T::Type{ x^3 + x^2 - 3, Tuple{Foat64}) == true
is_pure_and_fast(x -…