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### Context
The error message(s):
https://github.com/AlexsLemonade/refinebio/actions/runs/3109588470/jobs/5039930709#step:9:5124
```
#17 169.6 configure: Package dependency requirement 'libgit…
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### Context
In order to restore staging/prod deploy process CI/CD tests need to be fixed.
### Problem or idea
```
2023-02-16 00:58:52,759 local data_refinery_workers.downloaders.sra ERROR [d…
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I call configure with these arguments:
```
--with-ngs-sdk-prefix=/usr/local --with-ncbi-vdb-sources=/disk-samsung/freebsd-ports/biology/ncbi-vdb/work/ncbi-vdb-2.11.0 --with-xml2-prefix=/usr/local --…
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I am assembling a genome using Canu 2.2 with the following commands on a slurm cluster:
```
canu useGrid=false \
-p tf -d tf-pacbio \
genomeSize=164.4m \
-corrected \
corMhapSensitivity=norm…
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Hello! I encountered an error when analyzing HCA Smart-seq2 data from Mereu et al. (2020) (https://doi.org/10.1038/s41587-020-0469-4) that is available at NCBI-SRA SRR9621775 (https://trace.ncbi.nlm.n…
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Hi,
Is it possible to run your pipeline with funannotate installed with docker rather than conda ?
Second question : is it possible to add custom rnaseq data in addition to yours ?
Thank you v…
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reported by @jennaj
given the number of tools on Main the results of search needs to be better, mainly:
- give more results and let people scroll
- give more weight to name and section
- let people s…
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**Reviewer's comment**:In the NCBI SRA section (last) some images are quite difficult to describe, especially those of the process of downloading data from SRA. And complete transcriptions of images w…
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(Requested by Vahan for analysis in HIVE)
Collect a list of complete genome assembly (i.e. SARS-CoV-2 variant of concern such as alpha, beta, Gemma, delta, omicron) and their corresponding SRR acce…
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Hi all,
during creation of ArrowFiles, my PC gets stuck counting barcodes. One core just runs at full power but nothing changes. Neither is the Log updated beyond what I attached, nor does the Arr…