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"Start Protein Viewer' with PDB works,
but when select 'Launch Protein Viewer from Files(s)', vscode throw error msg:
"Command 'Launch Protein Viewer from File(s)' resulted in an error (Cannot read…
zirui updated
2 years ago
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For new term requests, please provide the following information:
## Preferred term label
protein-DNA complex
## Synonyms
DNA-protein complex
## Textual definition
A macromolecular complex …
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I'm using the C API of `block-aligner` to align protein sequences from UniProt database. There are `*`s in some protein sequences. Currently using `block-aligner` to align sequences containing `*` wil…
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MolSysMT has to give a name to proteins, small molecules, and entities. These names can be extracted from an mmtf file, but what happens with other forms? We probably need to implement in Sabueso the …
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Hi,
Thanks for the great database. I used NCYC on my MAG's contig and got the results. one thing I want to make sure is to get the particular gene sequence used for annotation. For say,
**G01_000000…
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Hi, thanks for your code. But when I run python main.py --dataset PROTEINS, there is an error as follows:
```Validation loss:0.513576095168655 accuracy:0.7567567567567568
Traceback (most recent call…
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**Original ticket**: https://humgenprojects.lumc.nl/trac/mutalyzer/ticket/164
**Original date**: 2014/04/05
**Original reporter**: _j DOT f DOT j DOT laros AND lumc DOT nl_
The following variant give…
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Hi
When I aligned the protein seq to my genome， I got a GFF file. But when I used this GFF file for Maker pipeline. I got an error. The error was caused by the start position and end position as bel…
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It seems like the NCBI doesn't like hypothetical proteins with EC numbers anymore.
They are unhappy with such annotations and are asking for the EC# to be removed.
`ArME14_ctg_01 funannotate mRNA …
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import parmed
mol = parmed.load_file("mol.prmtop", "mol.rst7")
mol_cut = protein_ligand_complex[":1