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Without looking too deeply through the code, is there anything specifically inhibiting the use of bulk RNA-seq with inferCNV (e.g. thinking regarding any model assumptions being implemented)? Thanks f…
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Hi,
I am new to DROP and blood RNAseq in general, so please let me know if the question was not described properly or other files should be provided.
Thanks!
My dataset : ten bam files from bl…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/BioSok/omada
Confirm the following by editing eac…
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I'd like to add the tag "Single_Cell_RNASeq" to the Expression Cluster schema. It should be placed under "Attribute_of"
?Expression_cluster Description ?Text …
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Hi bro. Do I need to construct a reference genome for Dynascope's Multi_? What species does the test data correspond to？
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Hi Richard,
I am just wanting to follow up on whether I've understood this correctly: 'Comparing your Iso-Seq data to the reference annotation (or short read RNAseq annotation)'
I have short rea…
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### Snakemake pipeline steps
**Alignment and quality control**
- [x] align
- [x] fingerprint
- [x] gencode
**Somatic variant calling**
- [x] mutect
- [x] m2db
**Copy number calling**
-…
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Sorry if I missed something and it is being taking care of, but the 'find marker genes' from the primary analysis for P25-P27, mouse, scRNA-seq, cochlear sensory neurons (Goodrich) returns an "Error r…
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Hi developers!!
I am analyzing a malaria dataset obtained where cells were highly synchronized at the ring stage. I have two samples, control, and knockout and I have to perform differential expre…
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Hi developers,
The current default usage of `kb count` is to generate a gene-level UMI count matrix. I wonder if it is possible to get the UMI count for each specific isoform using kb? Thank you if y…