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There may be a EG.5.1.3 sublineage with ORF1a:V274L (G1085T; NSP2:V94L), C27612T, and ORF1a:E2268V (A7068T; NSP3:E1450V) first detected in Massachusetts, USA.
As of 2023-09-23, Cov-Spectrum reports…
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Transferred from sars-cov-2-variants/lineage-proposals#148
**Query:** G22203A, C22995T, C28657T
**Earliest seq:** 2023-01-26 (EPI_ISL_17683933, Indonesia)
**Latest seq:** 2023-05-25 (EPI_ISL_177…
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BN.1.3.13 (S:V445A)+C3817T+C7006A,C22353A(S:A246D),C28432T(Orf9b:S50L)
GISAID query: T22896C,C17818T,C593T,C7390A
GISAID query for S:A264D branch: C22353A,C28432T (12 seqs from China, Japan, South…
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Hi,
Is any one can help me on the error (127)? Detail information is as follows. Thanks!
$ /home/grid/program/nextflow run epi2me-labs/wf-artic --scheme_name SARS-CoV-2 --scheme_version V1200 --mi…
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_transferred from sars-cov-2-variants/lineage-proposals#527_
**Defining Mutations:** `FL.10` > `C18888T` > `T11422C, G12797A(ORF1a:G4178S/nsp9_G38S), A17612G(ORF1b:N1382S/nsp13_N459S), A22629C(S:K3…
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There may be a EG.5.1 sublineage with ORF1b:K2557R (A21137G; NSP16:K160R) first detected in Guangdong, China.
This lineage is the parent of the lineage described in https://github.com/sars-cov-2-va…
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Query: C9166T, A10564T(Edited)
Query for F456L sequences: C9166T, A10564T, T22928C
Transferred from sars-cov-2-variants/lineage-proposals#617
FL.21> T2845C, C4543T, C9166T, A16431G, C27434T(Orf…
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I was monitoring a sublineage of XBB.1.16.6 since it was one sequences that gained convergently S:L455F, as today it reached 4 sequences so it is better to track it here:
Defining mutations:
XBB.1…
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Defining mutations:
GA.4>C23673T (S:S704L)>T5290C, C22295T (S:H245Y), A22995G (S:K478R), G23222A (S:E554K), C28896T (N:A208V)
GISAID query: C1670T, A3503G, C22295T, G23222A
Earliest seq: 2023-07-07…
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Defining mutations:
HK.3>C12651T (ORF1a:T4129I), C21998A (S:Q146K? it should be treated cautionlly), C22033A (S:F157L)
GISAID query: G5720A, C12651T, C22033A
Earliest seq: 2023-07-31 (Hubei Provi…