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Hi Aleksandr,
First of all I want to say I think you're doing crazy important stuff. I've been suggested to use SingleR, but as I've found it's not accurate ~1/3-1/2 of the time, especially with my…
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Dear Dr. Wang,
Dictys is a beautiful and thorough piece of work -- thank you for your continued efforts. I don't have a software issue to report, just a docs request. What's the mathematical formu…
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Thanks for providing such a useful tool 👍 !But the online page seems to be occasionally inaccessible, and I want to reproduce it locally. Since the `.h5ad` file in `./www/scanpy/` directory and those …
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I am interested in ecotyper and thank you for the great analysis method!
I have my own scRNA-seq data and run the ecotyper following Tutorial 5.
There are two input requirements: 1) expression mat…
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I have several done files (in alphabetical order: fastqs, remapping, retagging, variants, and vartrix) so think I'm stuck at the clustering stage (also as clusters_tmp.tsv is 0 bytes)
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the web …
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To satisfy the increasing need for scRNA-seq data and other omics data such as scATAC-seq, we'd like to add new features to BEELINE to enable the automatic downloading of datasets from data portals in…
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https://mp.weixin.qq.com/s/AzEcTn3Ug1rFPh1ZsmqHAg
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https://mp.weixin.qq.com/s/bLNs5wzvUrM_h5R-Hz72FA
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https://mp.weixin.qq.com/s/QXZgq-kefkiX1GwtKxvIUw
ixxmu updated
1 month ago
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**User story**
As a user of the scRNA Core pipeline, I would like to be able to create a plate (that represents a tube rack) in the LIMS that holds tubes containing banked PBMCs, so that I can track …