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Hi!
I have been using modkit for a while and I noticed that parallelizing `modkit extract ` doesn't really speed up the job. Specifically, I have been using it both on single bam files output by g…
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Hello,
I hope that you can help me with this :
Can I use nanocaller on my fastq.gz files generated using ONT minion technology ?
Can I use it to detect variants in fungus ?
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Data portal search should support search by NMDC identifier (slot `id`) for the Database Class slots where the Range is a Class which contains `id` as a required slot
slots:
- data_object_se…
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Hi,
I incidentally poked over your project and I wonder why you keep track of `Average read depth` and of `Observed insert size`. The former would be better replaced with `Median read depth` and th…
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When you just pass the input-fasta URL param, Nextclade web autostarts the analysis, but it shouldn't.
It should instead just load the sequences and do auto-dataset-detection
Repro:
1. Load ht…
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Dear Developers,
I'm trying this pipeline. However, when I typed
python ./scripts/Master.py -h
, it turned out:
Traceback (most recent call last):
File "./scripts/Master.p…
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These assays are in CELLxGENE (some are still private) but not addressed yet by the Census schema as included or explicitly excluded
```
10x transcription profiling
SORT-seq
CEL-seq
in situ seque…
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Hi there,
I browsed your interesting [paper](https://doi.org/10.1093/nar/gkad158) (that isnt mentioned in the README) and was intrigued by the speed improvement while promising a similar performanc…
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I've stumbled across Lwt documentation which states the following:
>With OCaml 4.04.0 and on a convenient syntax is available for sequencing Lwt operations using ;%lwt. This allows free mixing of sta…
Lupus updated
3 years ago
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