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I encountered some confusing results while testing sintax on my data. I'm running v 2.28.1 on near full length 16S amplicons against a custom database. For some of my samples (mostly ones without high…
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Hi! I have read the DeepMicrobes paper and it is great work! I'm planning to train the DeepMicrobes model using my data and I want it to predict the taxonomy of a given DNA sequence from phylum to spe…
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The BNTi (NAQS NSL) identifiers need verification and (most likely a BUG fix); example (https://dev1-ag-bie.oztaxa.com/species/tree/40017681/40017686#names):
`, `fi…
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Hi @GDKO,
it's me again @bheimbu. I have a question concerning the output of `avp prepare`…
```
query name donor ingroup AI HGTindex query hits number AHS outg_pct
229769_8676 Uniref90|UniRef9…
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### Metadata
- Authors: Ming-Yu Liu, Xun Huang, +4 authors, Jan Kautz
- Organization: NVIDIA, Cornell University, Aalto University
- Paper: https://arxiv.org/pdf/1905.01723.pdf
- Code: https://git…
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### Description of the bug
I cannot render the report because I don't have a core gene phylogeny when I am working with a eukaryote-specific dataset.
I successfully ran the pipeline with input …
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### What is the title of the roadmap you are submitting?
Roadmap to Bioinformatics
### Roadmap Link
# Bioinformatics Roadmap
**0. Why Bioinformatics?**
- **What is Bioinformatics?** Bioinfo…
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Hi,
UBERON:0004122 genitourinary system has_part UBERON:0001008 renal system,
but UBERON:0001008 renal system is not part_of UBERON:0004122 genitourinary system.
This is causing issues for disease …
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Following workflow produced plots without labels or class colors (edited for brevity):
```
pyani index pyani_sample_genomes
pyani anim pyani_sample_genomes pyani_sample_genomes_anim
pyani plot -…