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We might need to add the ability to register several URLs for a single dataset in the Clearinghouse. Paris has the ACEF export files not as a single zip archive but as:
http://rameau.snv.jussieu.fr…
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Hi, everyone
I already install the program and I tried to run the simple commando
`./interproscan.sh -i test_proteins.fasta -f tsv`
I ran in my lab server and the error was:
`09/10/2018 11:52…
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As a heads up, the hierarchy_code delimiter is '-' not ' - ' like taxonomic_coverage in the databases table. Here's the code I used to temporarily correct this problem for testing:
```
ALTER TABLE…
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add superclass NGFR for:
PRO:000011469 \! high affinity nerve growth factor receptor
PRO:000001405 \! tumor necrosis factor receptor superfamily member 16
also check synonyms are complete and E…
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For the cell ontology, is a pro ID for cathepsin superfamily possible? Also the following members of the family would be helpful...
Cathepsin D P07339
Cathepsin B P07858
Cathep…
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Dear Jon
I would like to report a bug
I tried to run Interproscan, as it was suggested with your fuannotate update:
```
sudo /home/linuxbrew/.linuxbrew/Cellar/funannotate/0.7.2/libexec/util…
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**Submitting author:** @TomKellyGenetics (S. Thomas Kelly)
**Repository:** https://github.com/TomKellyGenetics/graphsim
**Version:** v1.0.0-joss
**Editor:** @majensen
**Reviewer:** @rcannood, @corybru…
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For the non-elegans species descriptions --the c in 'c. elegans' needs to be capitalized--
Eg .from C. remanei descriptions-
WB:WBGene00045445 Cre-lys-1
Is an ortholog of **c. elegans** lys-1. Is p…
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cheers,
val
We have quite a few violations from PAINT in our checks
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- P…
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to reproduce:
```echo -e "9606\t" | nomer append | grep NCBI```
expected:
```9606 NONE 9606```
actual:
9606 SAME_AS NCBI:9606 Homo sapiens species | Eukaryota | Opisthokonta | Metazoa |…