WormBase genedesc_generator issues

WormBase / genedesc_generator

Automated gene descriptions generator for model organism databases

Other

1 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Remove GO terms with "obsolete" in descriptions

#68 rankishore closed 1 month ago
2
Remove capitalization for "Contributes" in human function description module in C. elegans descriptions

#67 rankishore closed 4 months ago
1
Remove capitalization from "Contributes to" in human functional sentences in C. elegans

#66 valearna closed 3 months ago
1
Move Human function module in C. elegans WB descriptions after the orthology sentence.

#65 valearna closed 3 months ago
1
WS291 automated descriptions ace file has a bug

#64 rankishore closed 10 months ago
3
Add paper evidence with DATABASE paper reference for WB descriptions

#63 valearna opened 12 months ago
3
Change sentence template for protein domain sentence

#62 rankishore opened 1 year ago
3
Duplicates in protein domain sentences

#61 rankishore opened 1 year ago
2
Use OAKlib instead of ontobio

#60 valearna opened 1 year ago
0
Use GO CAM to generate descriptions

#59 valearna opened 1 year ago
0
Delete annotations if a negative annotation exists for the same subject - object

#58 valearna opened 1 year ago
0
Look into male-specific anatomical entity sentences

#57 valearna opened 1 year ago
0
Deploy gene description pipeline on AWS

#56 valearna opened 1 year ago
0
Do not use elegans VC2010 gene identifiers in non-elegans species orthology files

#55 rankishore closed 1 year ago
1
Include C. briggase expression cluster data for WS287

#54 rankishore closed 1 year ago
1
Some protein domain descriptions are empty

#53 valearna closed 2 years ago
1
Inconsistent capitalization for sister species and info poor sentences

#52 valearna closed 2 years ago
1
Switch to GAF 2.2

#51 valearna closed 2 years ago
1
synchronize configuration files between alliance and wormbase

#50 valearna closed 2 years ago
1
Tissue expression-separate cells and tissues in the sentence

#49 rankishore opened 5 years ago
0
create a script to generate a tsv table with the numbers in __number_of_concise_descriptions files for all files in the WB folder

#48 valearna opened 5 years ago
0
WS272 pre-release file: Human gene names need capitalization in elegans descriptions

#47 rankishore closed 5 years ago
1
WS272 pre-release file: some elegans gene names in non-elegans species descriptions need capitalization

#46 rankishore closed 5 years ago
1
Move 'male' AO term to the end of the tissue expression sentence

#45 rankishore closed 5 years ago
1
WS272 pre-release file bug: Capitalization in non-elegans descriptions

#44 rankishore closed 5 years ago
1
add key terms for tissue expression (both from expression cluster and anatomy)

#43 valearna closed 1 year ago
0
there is a drop of ~1000 cases in the number of tissue expression sentences from WS269 to WS271

#42 valearna closed 5 years ago
0
when expression sentences are trimmed to "the cell", the resulting description is wrong

#41 valearna closed 5 years ago
1
remove terms ids from json report files

#40 valearna closed 5 years ago
0
create precanned module functions to generate sentences for common modules

#39 valearna closed 5 years ago
0
Orthology module: change template for C. elegans genes

#38 rankishore closed 5 years ago
0
Orthology module: Remove human gene family information

#37 rankishore closed 5 years ago
0
remove gene name from descriptions

#36 valearna closed 5 years ago
0
add protein domain information sentence if there is no GO data for the focus gene, with or w/o human GO data

#35 valearna closed 5 years ago
0
Use acedb as source for expression cluster sentences

#34 rankishore closed 2 years ago
1
create new script to generate xml page for J to index directories and files

#33 valearna closed 5 years ago
4
Include chemicals in expression cluster chemical regulation sentence based on popularity

#32 rankishore closed 2 years ago
1
Trim expression cluster anatomy terms for non-elegans species

#31 rankishore closed 5 years ago
0
How and when to include expression cluster data

#30 rankishore closed 5 years ago
0
Change template for gene regulation sentences

#29 valearna closed 5 years ago
0
Create report for genes: compare numbers in data source and numbers in descriptions file

#28 rankishore opened 5 years ago
2
Chemical regulation expression cluster data missing for WS269 prerelease file

#27 rankishore closed 5 years ago
0
Orthology data missing for some genes

#26 rankishore closed 5 years ago
0
WS269 prerelease files bug: related to phrase 'tiling array' in expression cluster sentences

#25 rankishore closed 5 years ago
0
code refactoring

#24 valearna closed 5 years ago
1
Include gene regulation sentences for only information poor genes

#23 rankishore closed 5 years ago
0
Include chemical regulation only for information poor genes

#22 rankishore closed 5 years ago
3
Tissue expression: anatomy term exclusions and renaming

#21 rankishore closed 5 years ago
0
Tissue expression module: how to include data

#20 rankishore closed 5 years ago
0
Data types included, priority and placement

#19 rankishore closed 5 years ago
1