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I am getting the following error when I run the example file rootprobs_phydyn.xml, replicated with BEAST 2.5.0 in Mac and 2.5.2 in Linux. In both cases I am using the latest version of PhyDyn installe…
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Hi Todd
A bunch of basic questions here:
We have high density EMG taken with a matrix of 8x16 electrodes. It would be really nice to use spm1 to compare changes in EMG RMS before - after our interv…
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Thanks for the great work!
There are more single-cell trajectory inference methods published recently and surely in the future. Will you keep adding the new methods into your evaluation? Thanks!
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Hello @dgrun and @avolab
This issue is for discussing the wrapper for your trajectory inference method, RaceID / StemID, which we wrapped for our benchmarking study ([10.1101/276907](https://doi.or…
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Hello Laleh, @flying-sheep and @theislab
This issue is for discussing the wrapper for your trajectory inference method, DPT, which we wrapped for our benchmarking study ([10.1101/276907](https://doi.…
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Minimal reproducible example:
```python
import numpy as np, pandas as pd
import numba
@numba.jit
def clifford_trajectory(a, b, c, d, x0, y0, n):
xs, ys = np.zeros(n), np.zeros(n)
…
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Samplers such as NUTS will continue to run when a model produces an occasional numerical error. Typically, a few of these errors is not problematic. However, DynamicsNUTS stops running completely as …
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Hi,
I have a problem to run the code
`model
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Hello, I have read through all the codes in detailed especially the progress inference related functions in pano_agent.py. I am sorry but I cannot see how in the case of with or without beam search (i…
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Hi dyno team,
After managing to run dyno on our HPC, I am running into a weird dependency issue when trying to run "projected_paga" on the test dataset. The same code works fine when using a differ…